View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5992_low_9 (Length: 349)
Name: NF5992_low_9
Description: NF5992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5992_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 13493008 - 13492687
Alignment:
| Q |
10 |
agaacctgtgcaatgaaggatgataatgaatcatgatcggttcaatgcaagtcatatatttttagaaaatttagatgnnnnnnnnta-gttaaaaagcaa |
108 |
Q |
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| T |
13493008 |
agaacctatgcaatgaaggatgataatgaatcatgatcagttcaatgcaagtcatatatttttagaaaatttagaagaaaaaaaaaatgttaaaaagcaa |
13492909 |
T |
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| Q |
109 |
gaattttaagaagacagcaaaattaaagtctcaacatcaaaagttgaagaatagttgaaattttgaagcacatttaacgaatatgttgtagcatactcac |
208 |
Q |
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| T |
13492908 |
gaattttaagaagacagcaaaaataaagtctcaacatcaaaagttgaagaatagttgaaattttgaagcacatttaacgaatatgttgtagcatactcac |
13492809 |
T |
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| Q |
209 |
acacactctattaaagtatacctgaagagtagtggaactgactgtgaatgatttgatatcaacaagctctcgcaaccagctgagaaaaactaaaagattc |
308 |
Q |
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| T |
13492808 |
acacactctattaaagtatacctgaagaatagtggaactgactgtgaatgatttgatatcaacaagctctcacaaccagctgagaaaaactaaaagattc |
13492709 |
T |
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| Q |
309 |
caatctaaatctgcgtaactcc |
330 |
Q |
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|||||||||||||||||||||| |
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| T |
13492708 |
caatctaaatctgcgtaactcc |
13492687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 27700970 - 27701027
Alignment:
| Q |
10 |
agaacctgtgcaatgaaggatgataatgaatcatgatcggttcaatgcaagtcatata |
67 |
Q |
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| T |
27700970 |
agaacctaagcaatgaaggatgatggtgaatcatgatcagtttaatgcaagtcatata |
27701027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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