View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_10 (Length: 480)
Name: NF5993_high_10
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 51359151 - 51359614
Alignment:
| Q |
1 |
accctggttgcacttcaagacatcagcctagaaaagatattcgatgacaacggaaagaaaaccctgtgctctgaatttccccagataatgcagcaggtat |
100 |
Q |
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| T |
51359151 |
accctggttgcacttcaagacatcaccctagaaaagatattcgatgacaacggaaagaaaaccctgtgctctgaatttccccagataatgcagcaggtat |
51359250 |
T |
|
| Q |
101 |
aatgctaattaaatagttctaatgagtatgttgatgttaataggaattgggaaatggttttacttgcactataattaatgtatgtgacgaagtttggatc |
200 |
Q |
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| T |
51359251 |
aatgctaattaaatagttctaatgagtatgttgatgttaataggaattgggaaatggttttacttgcactataattaatgtatgtgacgaagtttggatc |
51359350 |
T |
|
| Q |
201 |
tcttgacaaataaaaatatgtcaagatatgttgcttaacattcaatttgtaacgatatatgaattattttggtgcagggtttcatgtgtattcaaggcgg |
300 |
Q |
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| T |
51359351 |
tcttgacaaataaaa-tatgtcaagatatgttgcttaacattcaatttgtaacgatatatgaattattttggtgcagggtttcatgtgtattcaaggcgg |
51359449 |
T |
|
| Q |
301 |
tatttgtttatccagcatggggaggccaataacttatgagagagctgtagcatggaaagtattgaacgaagaagaatctgctcattgcatctgttttatg |
400 |
Q |
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| T |
51359450 |
tatttgtttatccagcatggggaggccaataacttatgagagagctgtagcatggaaagtattgaacgaagaagaatctgctcattgcatctgttttatg |
51359549 |
T |
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| Q |
401 |
ttcatcaattggtcttttgtctaatagattaaaagataggatgtaggaaaatagattgaaatgct |
465 |
Q |
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| T |
51359550 |
ttcatcaattggtcttttgtctaatagattaaaaggtaggatgtaggaaaatagattgaaatgct |
51359614 |
T |
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