View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5993_high_12 (Length: 422)
Name: NF5993_high_12
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 26867236 - 26866863
Alignment:
| Q |
1 |
tgagaagggtggaaacgaaatagtctaatttgttgcctgaactaatgaatgtacattttacatggaagtgacgatgcaaagagttggttaactaatctgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26867236 |
tgagaagggtggaaacgaaatagtctaatttgttgcctgaactaatgaatgtacgttttacatagaagtgacgatgcaaagagttggttaactaatctgt |
26867137 |
T |
|
| Q |
101 |
attggtcgttggcgtcaacatgataatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatctttacattaaatataaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26867136 |
attggtcgttggcgtctgcatgataatttagaagtttaacccgattagtctgataaaatattcctatacttgattagaatatctttacattaaatataaa |
26867037 |
T |
|
| Q |
201 |
aatattctggtatagggatattctatcataatcgaagttgttacttgttagctaacgcttcaaagcgaaaatgtatatataattaggacaaatcctgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26867036 |
aatattctggtatagggatattctatcaaaatcgaagttgttacttgttagctaacgctt-----cgaaaatgtatatataattaggacaaatcctgttg |
26866942 |
T |
|
| Q |
301 |
agccaacgttttttacttcaaccgtacagcccaatatatagtactatatccgttcctgattataagaccattttgagaa |
379 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| | | ||||||||||| ||||||||| |
|
|
| T |
26866941 |
agccaacgttttttacttcaactgtacaacccaatatatagtactacctccgtccttaattataagacccttttgagaa |
26866863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 34948688 - 34948651
Alignment:
| Q |
342 |
tactatatccgttcctgattataagaccattttgagaa |
379 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
34948688 |
tactacatccgttcctaattataagaccattttgagaa |
34948651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University