View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_17 (Length: 397)
Name: NF5993_high_17
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 12631923 - 12632292
Alignment:
| Q |
13 |
aaaattgaaccaattggacttaagcctctattctatacacttatacttgattttaattttacaaccctggtgttggtgcaaagtattcaccgactttacc |
112 |
Q |
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| T |
12631923 |
aaaattgaaccaattggacttaagcctctattctatacacttatacttggttttaattttacaaccctggtgttggtgcaaagtattcaccgactttacc |
12632022 |
T |
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| Q |
113 |
gatgactaatctctgctgtggaatctaactaaagacttttagtggggtctcccatcccaattcccaaccacattttgttatccacaagactcgaacccga |
212 |
Q |
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| T |
12632023 |
gatgactaatctctgctgtggaatctgactaaagacttttagtggggtctcccatcccaattcccaaccacattttgttatccacaagactcgaacccga |
12632122 |
T |
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| Q |
213 |
gactttacttaagagatctgagttcagtttcactcggaccagtgtgatgtatacttgttttagtttgtccttttgtattactttataatttctttaacaa |
312 |
Q |
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| T |
12632123 |
gactttacttaagagatctgagttcagtttcactcggaccagtgtgatgtatacttgttttagtttgtccttttgtattactttatagtttctttaacaa |
12632222 |
T |
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| Q |
313 |
tattttaagttgaataattagttttgagtttcatctnnnnnnnngtctatttaagttttaatatcttttt |
382 |
Q |
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| T |
12632223 |
tattttaagttgaataattagttttgagtttcatctaaaaaaaagtctatttaagttttaatatcttttt |
12632292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 10914872 - 10914941
Alignment:
| Q |
193 |
tccacaagactcgaacccgagactttacttaagagatctgagttcagtttcactcggaccagtgtgatgt |
262 |
Q |
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| T |
10914872 |
tccacaaggctcgaatccgagacctagcttaagggatccgagtccagtttcactcggaccaatgtaatgt |
10914941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 5013934 - 5013970
Alignment:
| Q |
214 |
actttacttaagagatctgagttcagtttcactcgga |
250 |
Q |
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| T |
5013934 |
actttgcttaagagatttgagttcagtttcactcgga |
5013970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 13636916 - 13636972
Alignment:
| Q |
195 |
cacaagactcgaacccgagactttacttaagagatctgagttcagtttcactcggac |
251 |
Q |
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| T |
13636916 |
cacaagacacgaacctgagaccttgcttaagagatctgagtcatgtttcactcggac |
13636972 |
T |
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