View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_22 (Length: 367)
Name: NF5993_high_22
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 53666465 - 53666123
Alignment:
| Q |
6 |
gacatcatcaatattaataaatttacttgcatttcatcttattcnnnnnnnccttttgtgagatgcatcacttaaatgattctgcctactatctactgat |
105 |
Q |
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| T |
53666465 |
gacatcatcaatattagtaaatttacttgcatttcatcttattctttttttccttttgtgagatgcatcacttaaatgattctgcctactatctactgat |
53666366 |
T |
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| Q |
106 |
caatatccagatatcaaaatttgatggaatatcttcctgatttgtatgcggaattttctcatgaaccaaagtgatcttcactgttgagtccgggtttaca |
205 |
Q |
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| T |
53666365 |
caatatccagatatcaaaatttgatggaatatcttcctgatttgtatgcggaattttctcatgaaccaaagggatcttcactgttgagtccgggtttacg |
53666266 |
T |
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| Q |
206 |
agttgctatttttaattaagctactataattatttgcgtggaggctgctgaataagaggatttcaacccaagttaaattgaagtgatgtggagtaactcg |
305 |
Q |
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| T |
53666265 |
agttgctatttttaattaagctactataattatttgcgtggaggctgttgaataagaggatttcaacccaagttaaattgaagtgatgtggagtaactcg |
53666166 |
T |
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| Q |
306 |
ttaagattcgttattattgtgatttcggatcaaaactcacacc |
348 |
Q |
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| T |
53666165 |
ttaagattcgttattattgtgatttcggatcaaaactcacacc |
53666123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 43396498 - 43396444
Alignment:
| Q |
132 |
gaatatcttcctgatttgtatgcggaattttctcatgaaccaaagtgatcttcac |
186 |
Q |
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| T |
43396498 |
gaatatcttcctgatttgtttgcggagttttctcatgtaccaaagagatattcac |
43396444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 21402235 - 21402206
Alignment:
| Q |
10 |
tcatcaatattaataaatttacttgcattt |
39 |
Q |
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| T |
21402235 |
tcatcaatattaataaatttacttgcattt |
21402206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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