View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_26 (Length: 349)
Name: NF5993_high_26
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 19656552 - 19656387
Alignment:
| Q |
16 |
caacatctcctgctattgcaacaactttctttgatatgaaagaactaaacttttcaccccactttgctctcaacacccgaaataaatcaatttcaaacac |
115 |
Q |
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| T |
19656552 |
caacatctcctgctattgccacaaccttctttgatatgaaagaactaaacttttcaccccactttgctcgcaacacccgaaataaatcaatttcaaacac |
19656453 |
T |
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| Q |
116 |
ctgttattggacaattcaagaaatttaagtcagaaaataaatgctacctctgtttactttttaatt |
181 |
Q |
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| T |
19656452 |
ctgttattggacaattcaagaaatttaagtcagaaaataaatgctacctctgtttactttttaatt |
19656387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 19873198 - 19873052
Alignment:
| Q |
16 |
caacatctcctgctattgcaacaactttctttgatatgaaagaactaaacttttcaccccactttgctctcaacacccgaaataaatcaatttcaaacac |
115 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||| || ||| |||||||||||||||||||| || |
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| T |
19873198 |
caacatctcctgctattgccacaaccttctttgatatgaaagagctaaaattttcaccccacttggctcgcagcacgcgaaataaatcaatttcaaaaac |
19873099 |
T |
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| Q |
116 |
ctgttattggacaattcaagaaatttaagtcagaaaataaatgctac |
162 |
Q |
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| T |
19873098 |
ctggtatcggagatttcaagaaatgtaagtcagaagataaatgctac |
19873052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 19895227 - 19895287
Alignment:
| Q |
16 |
caacatctcctgctattgcaacaactttctttgatatgaaagaactaaacttttcacccca |
76 |
Q |
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||||||||||||||| ||| ||||| ||||||||||| |||||| |||| | ||||||||| |
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| T |
19895227 |
caacatctcctgctactgccacaaccttctttgatataaaagaattaaaatcttcacccca |
19895287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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