View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_29 (Length: 326)
Name: NF5993_high_29
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 48451458 - 48451139
Alignment:
| Q |
1 |
aatgaaaatgtaaaaatatgtaaccttaatcaaaggataaaaggaaaagcaa-acacataaactgagtttttgcaaactgtgtttgaaatacagtcagta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48451458 |
aatgaaaatgtaaaaatatgtaaccttaatcaaaggataaaaggaaaagcaagacacataaactgagtttttgcaaactgtgtttgaaatacagtcagta |
48451359 |
T |
|
| Q |
100 |
caaaaacaagtagtgagacataagttaagtgcagaatatcaaacacatactatataagagaaattcaaagaacaaaagaactattcaattttaattaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48451358 |
caaaaacaagtagtgagacataagttaagtgcagaatatcaaacacatactatataagagaaattcaaagaacaaaagaactattcaattttaattaata |
48451259 |
T |
|
| Q |
200 |
aaatatgagtttctcaacagattctcggcagaagaatccaccatct--------gggaagcacacatgtaacacatccaagacaaactataacaaatgtt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48451258 |
aaatatgagtttctcaacagattctcggcagaagaatccaccatctgggggggggggaagcacacatgtaacacatccaagacaaactataacaaatgtt |
48451159 |
T |
|
| Q |
292 |
ggtaatacttgctagttgct |
311 |
Q |
| |
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|||||||||||||||||||| |
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| T |
48451158 |
ggtaatacttgctagttgct |
48451139 |
T |
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