View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5993_high_35 (Length: 283)

Name: NF5993_high_35
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5993_high_35
NF5993_high_35
[»] chr3 (1 HSPs)
chr3 (59-278)||(12088054-12088273)
[»] chr5 (3 HSPs)
chr5 (45-113)||(24562825-24562893)
chr5 (45-113)||(24603859-24603927)
chr5 (73-128)||(17445945-17446000)
[»] chr6 (2 HSPs)
chr6 (45-102)||(8885819-8885876)
chr6 (45-128)||(977343-977426)
[»] chr1 (1 HSPs)
chr1 (88-226)||(20410110-20410244)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 59 - 278
Target Start/End: Complemental strand, 12088273 - 12088054
Alignment:
Q  59 aaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgttttgatagtaattgatcttgtgaatgatgtgtat 158  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  12088273 aaaccgataccagtatatatataggtgataggaaagagttgcattctcgtatatacatgatgatgttttgatagtaattgatgttgtgaatgatgtgtat 12088174  T
Q  159 gaacgttgatgctaatggtgaaatgattgtatgctgttgttattttatgttgcttcatatgttctgatcatatgttctgaaatgtattttcatccctttg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  12088173 gaacgttgatgctaatggtgaaatgattgtatgctgttgttattttatgttgtttcatctgttctgatcatatgttttgaaatgtattttcacccctttg 12088074  T
Q  259 tcgttgttgtgtgttctgtg 278  Q
    ||||||||||||||| ||||    
T  12088073 tcgttgttgtgtgttttgtg 12088054  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 24562893 - 24562825
Alignment:
Q  45 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata 113  Q
    |||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||  |||||||||    
T  24562893 attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata 24562825  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 24603927 - 24603859
Alignment:
Q  45 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata 113  Q
    |||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||  |||||||||    
T  24603927 attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata 24603859  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 17446000 - 17445945
Alignment:
Q  73 atgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgttttg 128  Q
    |||||||| |||| ||||||||||||||||  |||||||||| ||||||| |||||    
T  17446000 atgcatatgggtgttaggaaagagttgcatcttcgcatatacatgatgatattttg 17445945  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 8885876 - 8885819
Alignment:
Q  45 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcat 102  Q
    |||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||||||    
T  8885876 attttggtgagtagagaccggtaccggtatgcatatgggtgataggaaggagttgcat 8885819  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 977426 - 977343
Alignment:
Q  45 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgttttg 128  Q
    |||||| |||||||| | ||||||||| ||||||||||||| |||||||||||| |||  | |||||||| | ||||| |||||    
T  977426 attttggtgagtagagatcgataccggcatgcatataggtgttaggaaagagttacatctttgcatatacatcatgatattttg 977343  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 20410110 - 20410244
Alignment:
Q  88 aggaaagagttgcattctcgcatatacgtgatgatgttttgatagtaattgatcttgtgaatgatgtgtatgaacgttgatgctaatggtgaaatgattg 187  Q
    ||||||||||| ||| || |||||||| ||||||||||| ||||||||||||  |||||||||||||| | ||  ||  || |||||| ||  ||||||     
T  20410110 aggaaagagttccat-ctagcatatacatgatgatgttt-gatagtaattgacattgtgaatgatgtgcacgagtgtgaatactaatgatg--atgattt 20410205  T
Q  188 tatgctgttgttattttatgttgcttcatatgttctgat 226  Q
    |||| ||||||||||| ||||||||| || | |||||||    
T  20410206 tatgttgttgttatttcatgttgctttatctattctgat 20410244  T

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