View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5993_high_36 (Length: 282)

Name: NF5993_high_36
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5993_high_36
NF5993_high_36
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-39)||(36707-36745)
[»] chr8 (18 HSPs)
chr8 (1-39)||(37511358-37511396)
chr8 (1-38)||(946240-946277)
chr8 (1-38)||(15725988-15726025)
chr8 (1-38)||(28090462-28090499)
chr8 (1-38)||(29459905-29459942)
chr8 (1-38)||(29773716-29773753)
chr8 (1-38)||(34332383-34332420)
chr8 (1-38)||(39171179-39171216)
chr8 (1-38)||(44935170-44935207)
chr8 (1-37)||(10280832-10280868)
chr8 (1-37)||(37161780-37161816)
chr8 (1-37)||(38502463-38502499)
chr8 (1-38)||(12163039-12163076)
chr8 (1-38)||(12407467-12407504)
chr8 (1-37)||(14498402-14498438)
chr8 (1-37)||(36002631-36002667)
chr8 (4-38)||(23286836-23286870)
chr8 (1-39)||(43049806-43049844)
[»] chr6 (11 HSPs)
chr6 (1-39)||(24487384-24487422)
chr6 (1-38)||(6848780-6848817)
chr6 (1-38)||(24213183-24213220)
chr6 (1-37)||(1096489-1096525)
chr6 (1-37)||(13390660-13390696)
chr6 (4-38)||(32833875-32833909)
chr6 (1-38)||(17545875-17545912)
chr6 (1-37)||(4110827-4110863)
chr6 (1-37)||(26358650-26358686)
chr6 (9-38)||(8401523-8401552)
chr6 (7-39)||(18667793-18667825)
[»] chr5 (19 HSPs)
chr5 (1-39)||(6113872-6113910)
chr5 (1-39)||(6318384-6318422)
chr5 (1-39)||(13410811-13410849)
chr5 (1-39)||(21605919-21605957)
chr5 (1-38)||(6561097-6561134)
chr5 (1-38)||(34302919-34302956)
chr5 (1-37)||(1661790-1661826)
chr5 (1-37)||(3056668-3056704)
chr5 (1-37)||(18228558-18228594)
chr5 (1-36)||(24098143-24098178)
chr5 (3-38)||(43237455-43237490)
chr5 (1-38)||(6532851-6532888)
chr5 (1-38)||(32467314-32467351)
chr5 (1-38)||(42917389-42917426)
chr5 (1-37)||(2414196-2414232)
chr5 (1-37)||(9535139-9535175)
chr5 (1-38)||(2029624-2029661)
chr5 (1-37)||(2141514-2141550)
chr5 (1-37)||(36338943-36338979)
[»] chr4 (23 HSPs)
chr4 (1-39)||(11109696-11109734)
chr4 (1-39)||(14802982-14803020)
chr4 (1-38)||(3716596-3716633)
chr4 (1-38)||(37855392-37855429)
chr4 (1-38)||(38836121-38836158)
chr4 (1-38)||(41759756-41759793)
chr4 (1-38)||(48579004-48579041)
chr4 (1-38)||(53388944-53388981)
chr4 (1-38)||(55722749-55722786)
chr4 (1-37)||(46041973-46042009)
chr4 (1-38)||(28037956-28037993)
chr4 (1-38)||(37519063-37519100)
chr4 (1-38)||(37523279-37523316)
chr4 (1-38)||(47302251-47302288)
chr4 (1-38)||(51435911-51435948)
chr4 (4-37)||(52589344-52589377)
chr4 (1-37)||(27539189-27539225)
chr4 (1-37)||(33076078-33076114)
chr4 (1-37)||(34280322-34280358)
chr4 (1-37)||(43137469-43137505)
chr4 (82-128)||(20142148-20142194)
chr4 (1-38)||(9858521-9858558)
chr4 (9-38)||(30343096-30343125)
[»] chr3 (17 HSPs)
chr3 (1-39)||(42067848-42067886)
chr3 (1-38)||(876320-876357)
chr3 (1-38)||(29786632-29786669)
chr3 (1-38)||(31309150-31309187)
chr3 (1-38)||(38785180-38785217)
chr3 (1-38)||(42364026-42364063)
chr3 (1-38)||(44670356-44670393)
chr3 (1-38)||(45636359-45636396)
chr3 (1-38)||(46959823-46959860)
chr3 (1-37)||(11140518-11140554)
chr3 (1-37)||(35171289-35171325)
chr3 (1-37)||(40650343-40650379)
chr3 (1-37)||(42848288-42848324)
chr3 (1-37)||(47948490-47948526)
chr3 (1-38)||(37492188-37492225)
chr3 (1-38)||(44365880-44365917)
chr3 (78-118)||(52656234-52656274)
[»] chr2 (14 HSPs)
chr2 (1-39)||(11813291-11813329)
chr2 (1-38)||(1353778-1353815)
chr2 (1-38)||(3383290-3383327)
chr2 (1-38)||(4673700-4673737)
chr2 (1-38)||(5389299-5389336)
chr2 (1-38)||(15771407-15771444)
chr2 (1-38)||(34665842-34665879)
chr2 (1-38)||(37083481-37083518)
chr2 (1-38)||(38963166-38963203)
chr2 (1-37)||(42427666-42427702)
chr2 (4-39)||(3810551-3810586)
chr2 (1-38)||(59189-59226)
chr2 (1-38)||(14532922-14532959)
chr2 (1-38)||(33423132-33423169)
[»] chr1 (27 HSPs)
chr1 (1-39)||(921940-921978)
chr1 (1-39)||(35305421-35305459)
chr1 (1-38)||(5956625-5956662)
chr1 (1-38)||(6520085-6520122)
chr1 (1-38)||(23056971-23057008)
chr1 (1-38)||(23061272-23061309)
chr1 (1-38)||(28494042-28494079)
chr1 (1-38)||(51369588-51369625)
chr1 (1-38)||(52303284-52303321)
chr1 (1-37)||(18642141-18642177)
chr1 (1-37)||(38262231-38262267)
chr1 (1-37)||(39190661-39190697)
chr1 (1-37)||(39971367-39971403)
chr1 (1-37)||(43306805-43306841)
chr1 (1-37)||(45423887-45423923)
chr1 (1-37)||(46770829-46770865)
chr1 (1-37)||(50905851-50905887)
chr1 (1-37)||(51520086-51520122)
chr1 (4-38)||(26102574-26102608)
chr1 (1-38)||(8461625-8461662)
chr1 (1-34)||(23459647-23459680)
chr1 (1-38)||(37499014-37499051)
chr1 (1-38)||(51985206-51985243)
chr1 (82-128)||(364017-364063)
chr1 (4-33)||(35242407-35242436)
chr1 (1-37)||(29106462-29106498)
chr1 (1-37)||(45673589-45673625)
[»] scaffold0077 (1 HSPs)
scaffold0077 (1-38)||(48281-48318)
[»] chr7 (10 HSPs)
chr7 (1-38)||(21699390-21699427)
chr7 (1-38)||(42711201-42711238)
chr7 (1-38)||(45458837-45458874)
chr7 (1-37)||(30623818-30623854)
chr7 (1-37)||(30863065-30863101)
chr7 (1-36)||(28327339-28327374)
chr7 (1-38)||(3910201-3910238)
chr7 (1-38)||(40942147-40942184)
chr7 (1-38)||(41913193-41913230)
chr7 (1-37)||(38129483-38129519)
[»] scaffold0283 (1 HSPs)
scaffold0283 (1-38)||(6510-6547)


Alignment Details
Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36707 - 36745
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36707 ttgttgacatatatattttagaaaatatcattttataaa 36745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37511396 - 37511358
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37511396 ttgttgacatatatattttagaaaatatcattttataaa 37511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 946277 - 946240
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  946277 ttgttgacatatatattttagaaaatatcattttataa 946240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15725988 - 15726025
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15725988 ttgttgacatatatattttagaaaatatcattttataa 15726025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28090499 - 28090462
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28090499 ttgttgacatatatattttagaaaatatcattttataa 28090462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29459942 - 29459905
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29459942 ttgttgacatatatattttagaaaatatcattttataa 29459905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29773753 - 29773716
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29773753 ttgttgacatatatattttagaaaatatcattttataa 29773716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34332420 - 34332383
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34332420 ttgttgacatatatattttagaaaatatcattttataa 34332383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39171179 - 39171216
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39171179 ttgttgacatatatattttagaaaatatcattttataa 39171216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44935207 - 44935170
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44935207 ttgttgacatatatattttagaaaatatcattttataa 44935170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10280868 - 10280832
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  10280868 ttgttgacatatatattttagaaaatatcattttata 10280832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37161816 - 37161780
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  37161816 ttgttgacatatatattttagaaaatatcattttata 37161780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38502499 - 38502463
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  38502499 ttgttgacatatatattttagaaaatatcattttata 38502463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12163039 - 12163076
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  12163039 ttgttgacagatatattttagaaaatatcattttataa 12163076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12407467 - 12407504
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  12407467 ttgttgacagatatattttagaaaatatcattttataa 12407504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14498402 - 14498438
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  14498402 ttgttgacatatatattttagaaaatattattttata 14498438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36002667 - 36002631
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||| ||||||||||||||||||||||||    
T  36002667 ttgttgacatatctattttagaaaatatcattttata 36002631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 23286870 - 23286836
Alignment:
Q  4 ttgacatatatattttagaaaatatcattttataa 38  Q
    |||| ||||||||||||||||||||||||||||||    
T  23286870 ttgaaatatatattttagaaaatatcattttataa 23286836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43049844 - 43049806
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  43049844 ttgttgatatttatattttagaaaatatcattttataaa 43049806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24487384 - 24487422
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24487384 ttgttgacatatatattttagaaaatatcattttataaa 24487422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6848817 - 6848780
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6848817 ttgttgacatatatattttagaaaatatcattttataa 6848780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24213220 - 24213183
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24213220 ttgttgacatatatattttagaaaatatcattttataa 24213183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1096525 - 1096489
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  1096525 ttgttgacatatatattttagaaaatatcattttata 1096489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13390696 - 13390660
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  13390696 ttgttgacatatatattttagaaaatatcattttata 13390660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 32833875 - 32833909
Alignment:
Q  4 ttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||||||||||    
T  32833875 ttgacatatatattttagaaaatatcattttataa 32833909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17545912 - 17545875
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  17545912 ttgttgacatatatattttagaaaatattattttataa 17545875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4110863 - 4110827
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4110863 ttgttgacatatatattttcgaaaatatcattttata 4110827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26358650 - 26358686
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  26358650 ttgttgacatatatattttaaaaaatatcattttata 26358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 8401523 - 8401552
Alignment:
Q  9 atatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||    
T  8401523 atatatattttagaaaatatcattttataa 8401552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 18667793 - 18667825
Alignment:
Q  7 acatatatattttagaaaatatcattttataaa 39  Q
    |||| ||||||||||||||||||||||||||||    
T  18667793 acatttatattttagaaaatatcattttataaa 18667825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6113872 - 6113910
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6113872 ttgttgacatatatattttagaaaatatcattttataaa 6113910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6318384 - 6318422
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6318384 ttgttgacatatatattttagaaaatatcattttataaa 6318422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13410849 - 13410811
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13410849 ttgttgacatatatattttagaaaatatcattttataaa 13410811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21605957 - 21605919
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21605957 ttgttgacatatatattttagaaaatatcattttataaa 21605919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6561134 - 6561097
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6561134 ttgttgacatatatattttagaaaatatcattttataa 6561097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34302956 - 34302919
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34302956 ttgttgacatatatattttagaaaatatcattttataa 34302919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1661790 - 1661826
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  1661790 ttgttgacatatatattttagaaaatatcattttata 1661826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3056704 - 3056668
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  3056704 ttgttgacatatatattttagaaaatatcattttata 3056668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18228558 - 18228594
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  18228558 ttgttgacatatatattttagaaaatatcattttata 18228594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 24098178 - 24098143
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  24098178 ttgttgacatatatattttagaaaatatcattttat 24098143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 43237455 - 43237490
Alignment:
Q  3 gttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  43237455 gttgacatatatattttagaaaatatcattttataa 43237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6532888 - 6532851
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  6532888 ttgttaacatatatattttagaaaatatcattttataa 6532851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32467351 - 32467314
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  32467351 ttgttgacatatatatttcagaaaatatcattttataa 32467314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42917426 - 42917389
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  42917426 ttgttgaaatatatattttagaaaatatcattttataa 42917389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2414232 - 2414196
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2414232 ttgttgacatatatattttagaaaacatcattttata 2414196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9535175 - 9535139
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9535175 ttgttgacatatatattttagaaaacatcattttata 9535139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2029661 - 2029624
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  2029661 ttgttgacttatatattttagaaaatattattttataa 2029624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2141550 - 2141514
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  2141550 ttgttgatatatatattttagaaaacatcattttata 2141514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36338943 - 36338979
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||| |||||||| |||||||||||||||||    
T  36338943 ttgttgacatgtatattttggaaaatatcattttata 36338979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11109696 - 11109734
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11109696 ttgttgacatatatattttagaaaatatcattttataaa 11109734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14803020 - 14802982
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14803020 ttgttgacatatatattttagaaaatatcattttataaa 14802982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3716633 - 3716596
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3716633 ttgttgacatatatattttagaaaatatcattttataa 3716596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37855429 - 37855392
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37855429 ttgttgacatatatattttagaaaatatcattttataa 37855392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38836158 - 38836121
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38836158 ttgttgacatatatattttagaaaatatcattttataa 38836121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41759756 - 41759793
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41759756 ttgttgacatatatattttagaaaatatcattttataa 41759793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48579004 - 48579041
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48579004 ttgttgacatatatattttagaaaatatcattttataa 48579041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 53388944 - 53388981
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53388944 ttgttgacatatatattttagaaaatatcattttataa 53388981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55722786 - 55722749
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55722786 ttgttgacatatatattttagaaaatatcattttataa 55722749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46042009 - 46041973
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  46042009 ttgttgacatatatattttagaaaatatcattttata 46041973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28037993 - 28037956
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  28037993 ttgttgaaatatatattttagaaaatatcattttataa 28037956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37519063 - 37519100
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  37519063 ttgttgacatatatattttagaaaatataattttataa 37519100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37523279 - 37523316
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  37523279 ttgttgacatatatattttagaaaatataattttataa 37523316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47302288 - 47302251
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  47302288 ttgttgacatatatattttaaaaaatatcattttataa 47302251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51435911 - 51435948
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  51435911 ttgttgacatatatattttagaaaataccattttataa 51435948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 52589377 - 52589344
Alignment:
Q  4 ttgacatatatattttagaaaatatcattttata 37  Q
    ||||||||||||||||||||||||||||||||||    
T  52589377 ttgacatatatattttagaaaatatcattttata 52589344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27539225 - 27539189
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||| |||||||||||||||||||||||||||||    
T  27539225 ttgttgatatatatattttagaaaatatcattttata 27539189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33076078 - 33076114
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33076078 ttgttgacatatatattttagaaaatattattttata 33076114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34280322 - 34280358
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  34280322 ttgttgacatatatattttaaaaaatatcattttata 34280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43137469 - 43137505
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43137469 ttgttgacatatatattttaaaaaatatcattttata 43137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 20142194 - 20142148
Alignment:
Q  82 aaaaatatttacaaagaaatttacatttatctcctttcaaggacatt 128  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||||    
T  20142194 aaaaatatttacagaaagatttacattcatctcctttcaaggacatt 20142148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9858558 - 9858521
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||| || |||||||||||||||||||||||||||    
T  9858558 ttgttgatatttatattttagaaaatatcattttataa 9858521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 30343125 - 30343096
Alignment:
Q  9 atatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||    
T  30343125 atatatattttagaaaatatcattttataa 30343096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42067886 - 42067848
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42067886 ttgttgacatatatattttagaaaatatcattttataaa 42067848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 876320 - 876357
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  876320 ttgttgacatatatattttagaaaatatcattttataa 876357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29786632 - 29786669
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29786632 ttgttgacatatatattttagaaaatatcattttataa 29786669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31309187 - 31309150
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31309187 ttgttgacatatatattttagaaaatatcattttataa 31309150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38785180 - 38785217
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38785180 ttgttgacatatatattttagaaaatatcattttataa 38785217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42364026 - 42364063
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42364026 ttgttgacatatatattttagaaaatatcattttataa 42364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44670356 - 44670393
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44670356 ttgttgacatatatattttagaaaatatcattttataa 44670393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45636396 - 45636359
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45636396 ttgttgacatatatattttagaaaatatcattttataa 45636359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46959860 - 46959823
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46959860 ttgttgacatatatattttagaaaatatcattttataa 46959823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11140554 - 11140518
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  11140554 ttgttgacatatatattttagaaaatatcattttata 11140518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35171289 - 35171325
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  35171289 ttgttgacatatatattttagaaaatatcattttata 35171325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40650379 - 40650343
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  40650379 ttgttgacatatatattttagaaaatatcattttata 40650343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42848288 - 42848324
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42848288 ttgttgacatatatattttagaaaatatcattttata 42848324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47948490 - 47948526
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  47948490 ttgttgacatatatattttagaaaatatcattttata 47948526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37492225 - 37492188
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  37492225 ttgttgacatatatattttaaaaaatatcattttataa 37492188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44365917 - 44365880
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  44365917 ttgttgacatatatattttaaaaaatatcattttataa 44365880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 52656234 - 52656274
Alignment:
Q  78 acttaaaaatatttacaaagaaatttacatttatctccttt 118  Q
    ||||||||| ||||||||||| ||||||||||| |||||||    
T  52656234 acttaaaaacatttacaaagagatttacatttaactccttt 52656274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11813291 - 11813329
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11813291 ttgttgacatatatattttagaaaatatcattttataaa 11813329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1353815 - 1353778
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1353815 ttgttgacatatatattttagaaaatatcattttataa 1353778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3383290 - 3383327
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3383290 ttgttgacatatatattttagaaaatatcattttataa 3383327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4673700 - 4673737
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4673700 ttgttgacatatatattttagaaaatatcattttataa 4673737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5389299 - 5389336
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5389299 ttgttgacatatatattttagaaaatatcattttataa 5389336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15771407 - 15771444
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15771407 ttgttgacatatatattttagaaaatatcattttataa 15771444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34665879 - 34665842
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34665879 ttgttgacatatatattttagaaaatatcattttataa 34665842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37083518 - 37083481
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37083518 ttgttgacatatatattttagaaaatatcattttataa 37083481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38963166 - 38963203
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38963166 ttgttgacatatatattttagaaaatatcattttataa 38963203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42427666 - 42427702
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42427666 ttgttgacatatatattttagaaaatatcattttata 42427702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 3810551 - 3810586
Alignment:
Q  4 ttgacatatatattttagaaaatatcattttataaa 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  3810551 ttgacatatatattttagaaaatatcattttataaa 3810586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 59226 - 59189
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  59226 ttgttgacatatatattttagaaaatataattttataa 59189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14532922 - 14532959
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  14532922 ttgttaacatatatattttagaaaatatcattttataa 14532959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33423132 - 33423169
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  33423132 ttgttgacatatatattttaaaaaatatcattttataa 33423169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 921940 - 921978
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  921940 ttgttgacatatatattttagaaaatatcattttataaa 921978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35305459 - 35305421
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35305459 ttgttgacatatatattttagaaaatatcattttataaa 35305421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5956625 - 5956662
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5956625 ttgttgacatatatattttagaaaatatcattttataa 5956662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6520085 - 6520122
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6520085 ttgttgacatatatattttagaaaatatcattttataa 6520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23057008 - 23056971
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23057008 ttgttgacatatatattttagaaaatatcattttataa 23056971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23061309 - 23061272
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23061309 ttgttgacatatatattttagaaaatatcattttataa 23061272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28494079 - 28494042
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28494079 ttgttgacatatatattttagaaaatatcattttataa 28494042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51369625 - 51369588
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51369625 ttgttgacatatatattttagaaaatatcattttataa 51369588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52303321 - 52303284
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52303321 ttgttgacatatatattttagaaaatatcattttataa 52303284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18642177 - 18642141
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  18642177 ttgttgacatatatattttagaaaatatcattttata 18642141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38262231 - 38262267
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  38262231 ttgttgacatatatattttagaaaatatcattttata 38262267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39190661 - 39190697
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39190661 ttgttgacatatatattttagaaaatatcattttata 39190697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39971367 - 39971403
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39971367 ttgttgacatatatattttagaaaatatcattttata 39971403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43306841 - 43306805
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  43306841 ttgttgacatatatattttagaaaatatcattttata 43306805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45423923 - 45423887
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  45423923 ttgttgacatatatattttagaaaatatcattttata 45423887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46770829 - 46770865
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  46770829 ttgttgacatatatattttagaaaatatcattttata 46770865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50905887 - 50905851
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  50905887 ttgttgacatatatattttagaaaatatcattttata 50905851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51520122 - 51520086
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  51520122 ttgttgacatatatattttagaaaatatcattttata 51520086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 26102574 - 26102608
Alignment:
Q  4 ttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||||||||||    
T  26102574 ttgacatatatattttagaaaatatcattttataa 26102608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8461625 - 8461662
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  8461625 ttgttgacatatatattttagaaaatattattttataa 8461662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23459647 - 23459680
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcatttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  23459647 ttgttgacatatatattttagaaaatatcatttt 23459680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37499051 - 37499014
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  37499051 ttgttgacatatatattttagaaaatattattttataa 37499014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51985243 - 51985206
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  51985243 ttgttgacaaatatattttagaaaatatcattttataa 51985206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 364063 - 364017
Alignment:
Q  82 aaaaatatttacaaagaaatttacatttatctcctttcaaggacatt 128  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||||    
T  364063 aaaaatatttacagaaagatttacattcatctcctttcaaggacatt 364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 35242407 - 35242436
Alignment:
Q  4 ttgacatatatattttagaaaatatcattt 33  Q
    ||||||||||||||||||||||||||||||    
T  35242407 ttgacatatatattttagaaaatatcattt 35242436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29106462 - 29106498
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||| || ||||||||||||||||||||||||||    
T  29106462 ttgttgatatgtatattttagaaaatatcattttata 29106498  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45673625 - 45673589
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  45673625 ttgttgacaaatatattttagaaaatattattttata 45673589  T

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Target: scaffold0077 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48318 - 48281
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48318 ttgttgacatatatattttagaaaatatcattttataa 48281  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21699390 - 21699427
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21699390 ttgttgacatatatattttagaaaatatcattttataa 21699427  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42711238 - 42711201
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42711238 ttgttgacatatatattttagaaaatatcattttataa 42711201  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45458874 - 45458837
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45458874 ttgttgacatatatattttagaaaatatcattttataa 45458837  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30623818 - 30623854
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  30623818 ttgttgacatatatattttagaaaatatcattttata 30623854  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30863101 - 30863065
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  30863101 ttgttgacatatatattttagaaaatatcattttata 30863065  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28327374 - 28327339
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  28327374 ttgttgacatatatattttagaaaatatcattttat 28327339  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3910238 - 3910201
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  3910238 ttgttgacatatatattttagaaaatattattttataa 3910201  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40942184 - 40942147
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  40942184 ttgttgacatatatattttaaaaaatatcattttataa 40942147  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41913193 - 41913230
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  41913193 ttgttgacatatatattttagaaaatattattttataa 41913230  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38129483 - 38129519
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttata 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  38129483 ttgttgacatatatattttagaaaacatcattttata 38129519  T

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Target: scaffold0283 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6547 - 6510
Alignment:
Q  1 ttgttgacatatatattttagaaaatatcattttataa 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  6547 ttgttgacatatatattttacaaaatatcattttataa 6510  T

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