View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5993_high_38 (Length: 261)
Name: NF5993_high_38
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 29631783 - 29632011
Alignment:
| Q |
16 |
cactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29631783 |
cactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcc |
29631882 |
T |
|
| Q |
116 |
tcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatccttgggtcctcgct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29631883 |
tcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatccttgggtcctcgct |
29631982 |
T |
|
| Q |
216 |
ccgcctcatccttacggtggttgtgggtg |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29631983 |
ccgcctcatccttacggtggttgtgggtg |
29632011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 29630664 - 29630906
Alignment:
| Q |
16 |
cactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcc |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| ||||||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
29630664 |
cactgcattcctaaggttctagaaggccgtgatgtggttggaatcgatgagactggtagtggtaaaacggcagcttttgcgcttcccattcttcaacgcc |
29630763 |
T |
|
| Q |
116 |
tcggtga------gactccttttgg------tgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatcct |
203 |
Q |
| |
|
||| || || ||||| || |||||||||||| || ||||||||||| |||||||||||| |||||||||| ||||||||| | ||| |
|
|
| T |
29630764 |
tcgccgagcatccgaaacctttcggtgtgtatgtgtttgctctcgtgctgacgcccacgcgcgagcttgcgattcagctggcagaccagtttttggccct |
29630863 |
T |
|
| Q |
204 |
tgggtcctcgctccgcctcatccttacggtggttgtgggtgat |
246 |
Q |
| |
|
|||||||||||||| || || ||||||||| |||||||||||| |
|
|
| T |
29630864 |
tgggtcctcgctcctccccagccttacggttgttgtgggtgat |
29630906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 27664042 - 27663897
Alignment:
| Q |
40 |
ggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtgagactccttttggtgtgt |
139 |
Q |
| |
|
|||||||||||||| ||||| || ||||||| || ||||||||||| || ||||||||||| ||||| || || || | ||| | | |||||||||| |
|
|
| T |
27664042 |
ggccgtcatgtaatcggaatcgaccaaactggaagcggtaaaacagcggcatttgcgcttccgattctgcagcggcttgctgaacatacgtttggtgtgt |
27663943 |
T |
|
| Q |
140 |
ttgctcttgtactgacgcccacccgcgagcttgcggttcagctggc |
185 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||| ||||| |||| |
|
|
| T |
27663942 |
ttgcgcttgtggtgacgcccacgcgcgagcttgcgtttcagttggc |
27663897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University