View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_49 (Length: 242)
Name: NF5993_high_49
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_49 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 47592590 - 47592364
Alignment:
| Q |
16 |
atatatacctggttcctttgaagcttgttttccaccatccaagaaacttgaatgcttctggagtttagactttctctgcaaagacttaactaatttagct |
115 |
Q |
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| T |
47592590 |
atatatacctggttcctttgaagcttgttttccaccatccaagaaacttgaatgcttctggagtttagactttctctgcaaagacttaactaatttagct |
47592491 |
T |
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| Q |
116 |
taacataataaattatgtaaccattgtaataaccaataagcacaatgtgttggatatatattatagatcataaacatacctttgttcttgttgcagagaa |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47592490 |
taacataataaattatgtaaccattgtaataactaataagcacaatgtgttggatatatattatagatcataaacatacctttgttcttgttgcagagaa |
47592391 |
T |
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| Q |
216 |
agaaggggaaaaatcaagtgtattctc |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
47592390 |
agaaggggaaaaatcaagtgtattctc |
47592364 |
T |
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