View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_52 (Length: 236)
Name: NF5993_high_52
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 6346404 - 6346607
Alignment:
| Q |
17 |
actatgtatagagtttcaaatattaattacaacatggcctacagctagctgttatgctcatttacttgcttgtctttgctgtcactgtgtcaccatagtt |
116 |
Q |
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| T |
6346404 |
actatgtatagagttacaaatattaattgcaacatggcctacagctagctgttgtgctcatttacttgcttgtctttgctgtcactgtgtcaccatagtt |
6346503 |
T |
|
| Q |
117 |
attattttgtacttctgtattgtctccagaatttacttcctcaaggtccactgtgactatacatggtttgagctattaggtttttcaaataatgggggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6346504 |
attattttgtacttctgtattgtctccagaatttacttcctcaaggtccactgtgactattcatggtttgagctattaggtttttcaaataatgggggaa |
6346603 |
T |
|
| Q |
217 |
gaat |
220 |
Q |
| |
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|||| |
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| T |
6346604 |
gaat |
6346607 |
T |
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