View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5993_high_56 (Length: 225)
Name: NF5993_high_56
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_56 |
 | |
|
| [»] scaffold0436 (1 HSPs) |
| | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0670 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 23450145 - 23450346
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattatttt-acaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatc |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||| |
|
|
| T |
23450145 |
acatcatcatcttacgtcattagcaactcatcattatttttacaccatatattcgtctacttatgtctaactcttaattttgtcatattcacgtcatatc |
23450244 |
T |
|
| Q |
108 |
taaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccacct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23450245 |
taaatcttacacccaccattagtttaattttcattctttgcattttttactcttagtgacatacttcatccttcatcttatccgtccatttaacccacct |
23450344 |
T |
|
| Q |
208 |
at |
209 |
Q |
| |
|
|| |
|
|
| T |
23450345 |
at |
23450346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 24495259 - 24495459
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
|
|
| T |
24495259 |
acatcatcatcttacatcattagcaactcatcattattttacaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatattt |
24495358 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||| |
|
|
| T |
24495359 |
aaatcttacacccaccattagtttgattttcattctcagcatcttttactcctagtgacatacttcatccttcatcttatccatgcattaaacctaccta |
24495458 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
24495459 |
t |
24495459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 1081 - 881
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| | |
|
|
| T |
1081 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcataattttggcatattcacatcatatat |
982 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
981 |
aaatcttacacccaccattagtttaattttcattctctgcgtcttttactcctagtgacacacttcatccttcatcttatccgttcttttaacccaccta |
882 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
881 |
t |
881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 23844676 - 23844876
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
23844676 |
acatcatcatcttacgtcattagcaactcatcattattttacaccatatattcgtctacttatgtctaactcataattttgtcatatttacatcatatct |
23844775 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
23844776 |
aaatcttacacccaccattagtttaattttcattctctacatcttttactcctagtgacacacttcatccttcatcttattcgttcatttaacccaccta |
23844875 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
23844876 |
t |
23844876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 24431674 - 24431474
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
24431674 |
acatcatcatcttatgtcattagcaactcatcattattttacaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatatct |
24431575 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
24431574 |
aattcttacacccaccattagtttaattttcattctctacatcttttactcctagtgacatatttcatccttcatcttatccgttcacttaacccaccta |
24431475 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
24431474 |
t |
24431474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 23210991 - 23210791
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
23210991 |
acatcatcatcttacgtcattagcaactcatcattattttacaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcacatct |
23210892 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | |||||||||| | |||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
23210891 |
aaatcttacacccaccattagtttaattttcattctcttcttcttttactccttgtgacacacttcatccttcatcttattcgttcatttaacccaccta |
23210792 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
23210791 |
t |
23210791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 32410381 - 32410581
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
32410381 |
acatcatcatcttacgtcattagcaactcatcattattttacaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatatct |
32410480 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| || ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
32410481 |
aaatcttacacccaccattagtttaattttcattctctgcatcttttactcctggtggcacacttcatccttcatcttattcgttcatttaacccaccta |
32410580 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
32410581 |
t |
32410581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 36916 - 36716
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
36916 |
acatcatcatcttacatcattagcaactcatcattattttacaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatatct |
36817 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||| |
|
|
| T |
36816 |
aaatcttacacccaccattagtttgattttcattctctgcatattttactcatagtgacatacttcatccttcatcttatccatgcattaaacctaccta |
36717 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
36716 |
t |
36716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 23845086 - 23844886
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
23845086 |
acatcatcatcttacgtcattagcaactcataattattttacaccatatattcgtctacctatgtctaactcataattttgtcatattcacatcatatct |
23844987 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccaccta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23844986 |
aaatcttacacccaccattagtttaattttcattctctacatcttttactcccactgacacacttcatccttcatcttatccgttcatttaacccaccta |
23844887 |
T |
|
| Q |
209 |
t |
209 |
Q |
| |
|
| |
|
|
| T |
23844886 |
t |
23844886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 18544742 - 18544653
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattca |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
18544742 |
acatcatcatcttacgtcattagcaactcatcattaatttacatcatatatttgtctacttatgactaactcataattttgtcatattca |
18544653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 12056879 - 12057070
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
12056879 |
acatcatcatcttacgtcattagcaattcatcattattttacaccatatatttgtctacttatgtctaactcataattttgtcatattcacat-atatct |
12056977 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
12056978 |
aaatcttacacccaccattagtttaattttcattctctacatcttttactcctagtgacacacttcatccttcatcatatccgttcatttaac |
12057070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 13296217 - 13296296
Alignment:
| Q |
12 |
tcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtc |
91 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||| |||| || ||||| |
|
|
| T |
13296217 |
tcattatcttacgtcattagcaactcatcatcaacttacaccatatattcgtctacttaagtctaagtcatcatcttgtc |
13296296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 12386 - 12191
Alignment:
| Q |
14 |
atcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatctaaatc |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
12386 |
atcatcttacgtcattagaaactcatcattattttataccatatattcgtctactcatttctaactcataattttgtcatattcacatcatatctaaatc |
12287 |
T |
|
| Q |
114 |
ttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatacttcatccttcatcttatccgtccatttaacccacctat |
209 |
Q |
| |
|
| ||||||||||||||||| |||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12286 |
gttcacccaccattagtttagttttcattctctacatcttttactcctagtgacacacttcatccttcatcttatccgttcatttaacccacctat |
12191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 16478173 - 16478335
Alignment:
| Q |
9 |
acatcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtcttattcacatcatatct |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||| |
|
|
| T |
16478173 |
acatcatcatcttacgtcattagcaactcatcattattttacaccatatattcgtctacttatgtctaactcataa--ttgtcatattaacatcatatct |
16478270 |
T |
|
| Q |
109 |
aaatcttacacccaccattagtttaattttcattctttgcatcttttactcatagtgacatactt |
173 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
16478271 |
aaatcttacacccaccattagttcaattttcattctctgcatattttactcctagtgacatactt |
16478335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 42597 - 42518
Alignment:
| Q |
12 |
tcatcatcttacgtcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtc |
91 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||| || ||||| |
|
|
| T |
42597 |
tcattatcttacgtcattagcaactcatcattaatttacaccatatattcgtctacttaagtctaagtcatcatcttgtc |
42518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 16481238 - 16481281
Alignment:
| Q |
166 |
acatacttcatccttcatcttatccgtccatttaacccacctat |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16481238 |
acatacttcatccttcatcttatccgttcatttaacccacctat |
16481281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0670 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0670
Description:
Target: scaffold0670; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 5701 - 5767
Alignment:
| Q |
25 |
tcattagcgactcatcattattttacaccatatattcgtctacttatgtctaactcattattttgtc |
91 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5701 |
tcattagcaactcttcattaatttacaccatatattcgtctacttatgtctaactcataattttgtc |
5767 |
T |
|
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