View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_8 (Length: 516)
Name: NF5993_high_8
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 257 - 499
Target Start/End: Original strand, 45634609 - 45634851
Alignment:
| Q |
257 |
aagcaccgcctctgtactacatacataccatcagaaggatgttgcaatagaagcactaccagcctcaaccttaacagcaagacgcatgccacttgaacaa |
356 |
Q |
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| T |
45634609 |
aagcaccgcctctgtactacatacataccatcagaaggatgttgcaatagaagcactaccagcctcaaccttaacagcaagacgcatgccacttgaacaa |
45634708 |
T |
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| Q |
357 |
tctccaaaagtagcagatatgaaataatgagttcctgcagtcttaagagctatggttgtctcaccactattgtctgaactaattggatttccagtggtgc |
456 |
Q |
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| T |
45634709 |
tctccaaaagtagcagatatgaaataatgagttcctgcagtcttaagagctatggttgtctcaccactattgtctgaactaattggatttccagtggtgc |
45634808 |
T |
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| Q |
457 |
aggagatgtaatcacttgctgcaacttcatccacagtgtgtat |
499 |
Q |
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| T |
45634809 |
aggagatgtagtcacttgctgcaacttcatccacagtgtgtat |
45634851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 45634368 - 45634531
Alignment:
| Q |
14 |
atcaacatgagaaaaatctccataaccaataatcattcaatatattagattactacagaattattgatccgtgcatacataaacacaacaagcacacgac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45634368 |
atcaacatgagaaaaatctccataaccaataatcattcaatatattagattactacagaattattgatccgtgcatacataaacacaacacgcacacgac |
45634467 |
T |
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| Q |
114 |
acatagtttaaaaatgaaaacaattaatagtagctacaagaacctttataaatctgaatggatc |
177 |
Q |
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| T |
45634468 |
acatagtttaaaaatgaaaacaattaatagtagctacaagaacctttataaatctgaatggatc |
45634531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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