View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_high_9 (Length: 495)
Name: NF5993_high_9
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 204 - 362
Target Start/End: Complemental strand, 53838912 - 53838754
Alignment:
| Q |
204 |
atatacaagtaggcatggcataagaggacgtgagataatgttgatattgaattagtttttgtattttattttaaaaatgttattcatgtgtttggctcca |
303 |
Q |
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| T |
53838912 |
atatacaagtaggcatggtataagaggacgtgagataatgttgatattgaatttgtttttttattttattttaacgatgttattcatgcgtttggttcca |
53838813 |
T |
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| Q |
304 |
accattatgtttgatgcaaatacatatcattatgtgtgtcctttgctaatttttcatat |
362 |
Q |
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| T |
53838812 |
accattatgtttgatgcaaatacatatcattatgtgtgtcatttgctaatttttcatat |
53838754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 53839104 - 53838952
Alignment:
| Q |
13 |
aatattactgctcagtggaatgcccctcccattcaagaaatttgtaaacctcttcttgaacaaaattgattttcaaa-nnnnnnnncacaggtagcgcca |
111 |
Q |
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| T |
53839104 |
aatattactgctcagtggaatgcccctcccattcaagaaatttgtaaacctcttcttgaacaaaattgattttcaaatttttatttcacaggtagcgcca |
53839005 |
T |
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| Q |
112 |
catacaaatttagtacgctacacaaaattggtgaacatagaggaaagacacag |
164 |
Q |
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| T |
53839004 |
catacaaatttagtacactacacaaaattggtgaacatagaggaaagacacag |
53838952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 360 - 485
Target Start/End: Complemental strand, 53838299 - 53838176
Alignment:
| Q |
360 |
tatttagatacacttttaatacaaaataagcttcaattttgacgttcatctttgtaaatgctaattaacatcaataggatgctagtgtttatcttcaaag |
459 |
Q |
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| T |
53838299 |
tatttagatacacttttaatacaa--taagcttcaattttgacgttcatctttgtaaatgctaattaacatcaataggatgctagtgtttatcttcaaag |
53838202 |
T |
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| Q |
460 |
cttttattgtcgtgaatgttttgatg |
485 |
Q |
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| T |
53838201 |
cttttattgtcgtgaatgtttggatg |
53838176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 368 - 485
Target Start/End: Complemental strand, 53832388 - 53832271
Alignment:
| Q |
368 |
tacacttttaatacaaaataagcttcaattttgacgttcatctttgtaaatgctaattaacatcaataggatgctagtgtttatcttcaaagcttttatt |
467 |
Q |
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| T |
53832388 |
tacacttttaatacaaaataaacttcaattttgacgttcatctttgtaaatgctaattaacatcaataggatgctagtgtttatcttcaaagcttttatt |
53832289 |
T |
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| Q |
468 |
gtcgtgaatgttttgatg |
485 |
Q |
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| T |
53832288 |
gtcgtgaatgtttggatg |
53832271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 53831180 - 53831123
Alignment:
| Q |
28 |
tggaatgcccctcccattcaagaaatttgtaaacctc-ttcttgaacaaaattgattt |
84 |
Q |
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| T |
53831180 |
tggaatgcccctcccattgaagaaatttgtaaaccccattcttcaacaaaattgattt |
53831123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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