View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_1 (Length: 822)
Name: NF5993_low_1
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 364 - 813
Target Start/End: Complemental strand, 32489049 - 32488586
Alignment:
| Q |
364 |
ttgaaagacttttaacactgaagtattcttaacagtttccccatcaagcttttctattcgtatcaaattcatgannnnnnnnnnaacatgcacgatggta |
463 |
Q |
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| T |
32489049 |
ttgaaagacttt-aacactgaagtattcttaacggttttcccatcaagcttttctattcgtatcaaattcatgaatatttttttaacatgcacgagggta |
32488951 |
T |
|
| Q |
464 |
ttattttgaacggtttagaccaaagttagaatttcaaggtaaagctatctgtaaaattagttttctaatttaaccttcattttatcacaagttcctta-- |
561 |
Q |
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| T |
32488950 |
ttattttgaacagtttagaccaaagttagaatttcaagttaaagctatctgtaaaattagttttctaatttacccttcattttatcacaagtaccttata |
32488851 |
T |
|
| Q |
562 |
-------------atattctactttgtgtaagcttttgctaattttattctaccatttattcttttgatttggaaaaaacaaacaacctatctgtaattg |
648 |
Q |
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| T |
32488850 |
taaaactaagttaatattctactttgcgtaagcttttgctaattttattctaccatttactcttttgatttggaaaaaacaaacaacctatctgtaattg |
32488751 |
T |
|
| Q |
649 |
tttagccagatgtaatttatatcctaacaactaacaagaatgaaattttttcaagccccatcctagtcttttaaaagcacgtatataccaacaagaccaa |
748 |
Q |
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| T |
32488750 |
tttagccagttgtaatttatatcctaacaactaacaagaatgaaattttttcaagccacatcctagtcttttaaaagcacgtatatatcaacaagaccaa |
32488651 |
T |
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| Q |
749 |
acactattttttctcatcatcattttgaagcatacattaatgtattgaccatagaataatctacc |
813 |
Q |
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| T |
32488650 |
acactattttttctcatcatcattttgaagcatacattaatgtattgaccatagaataagctacc |
32488586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 32490003 - 32489681
Alignment:
| Q |
1 |
tctgaatatactatgtattgtctattccatgtttactattattatttgtatcaggattgttgaaattatcgcaagagaaagacgaaaaatttagggcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32490003 |
tctgaatatactatgtattgtctattccatgtttactattattatttgtatcaggattgttgaaattatcgcaaaagaaagacgaaaaatttagggcaaa |
32489904 |
T |
|
| Q |
101 |
cttttggaccaatttgtaaacttgtgtgccaaaagcagaaatatggtgttactgctattgctgtagcatttggttaaatcttgcatgaattgtacagtta |
200 |
Q |
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| T |
32489903 |
cttttggaccaatttgtaaacttgtgtgccaaaagcagaaatatggtgttactgctattgttgtagcatttggttaaatcttgcatgaattgtacagtta |
32489804 |
T |
|
| Q |
201 |
gaaatctaggaagtaagagtagtgtagttatgtcaatatttatatgcttcccacacgattacttgaaatttctttcacttcattgtaggattttacgctg |
300 |
Q |
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| T |
32489803 |
gaaatctagg-agtatgagtagtgtagttatgtcaatatttatatgcttcccacacgagtagttgaaatttctttcacttcattgtaggattttacgctg |
32489705 |
T |
|
| Q |
301 |
ttattccaactaccacaacatttc |
324 |
Q |
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|||||||||||| ||||||||||| |
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| T |
32489704 |
ttattccaactaacacaacatttc |
32489681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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