View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_11 (Length: 437)
Name: NF5993_low_11
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 38936949 - 38936541
Alignment:
| Q |
14 |
atcaccgaagcatttgggattcatccaaatcttagtttcatctcacttagcagaaatcgcctcattggttatctctctccagattggggtaaatgtatca |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936949 |
atcacagaagcatttgggattcatccaaatcttagtttcatctcacttagcagaaatcgcctcattggttatctctctccagattggggtaaatgtatca |
38936850 |
T |
|
| Q |
114 |
gcttaactgagatggaaatgagtggaaacaaactttctggaaaaattccaatcgacctaaataagttgagtaaattacaatttcttagcctgcactccaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936849 |
gcttaactgagatggaaatgagtggaaacaaactttctggaaaaattccaatcgacctaaataagttgagtaaattacaatttcttagcctgcactccaa |
38936750 |
T |
|
| Q |
214 |
cgaattcaccggaaatatcccacatgaaattggaaatataagtctgctcttcatgttgaacttgagcaggaaccatttatcgggagaaatcccaaagagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936749 |
cgaattcaccggaaatatcccacatgaaattggaaatataagtctgctcttcatgttgaacttgagcaggaaccatttatcgggagaaatcccaaagagt |
38936650 |
T |
|
| Q |
314 |
attggaagattagctcaacttaatattgttgatttatcagataataacttcagtggaagcattcctaatgagctcggtaattgtaatcggttactaagca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936649 |
attggaagattagctcaacttaatattgttgatttatcagataataacttcagtggaagcattcctaatgagctcggtaattgtaatcggttactaagca |
38936550 |
T |
|
| Q |
414 |
tgaacttaa |
422 |
Q |
| |
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||||||||| |
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| T |
38936549 |
tgaacttaa |
38936541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 39306002 - 39306411
Alignment:
| Q |
13 |
catcaccgaagcatttgggattcatccaaatcttagtttcatctcacttagcagaaatcgcctcattggttatctctctccagattggggtaaatgtatc |
112 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||| ||||||||| || || |||||| | |||| ||||||||||| ||||||||||||||| |
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| T |
39306002 |
catcacagaatcatttgggattcatacaaatcttattttcatctcgctaagtcgaaatcatcgtgttggccatctctctccaatgtggggtaaatgtatc |
39306101 |
T |
|
| Q |
113 |
agcttaactgagatggaaatgagtggaaacaaactttctggaaaaattccaatcgacctaaataagttgagtaaattacaatttcttagcctgcactcca |
212 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||| ||||||||| ||||||||| |
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| T |
39306102 |
agcttaactgcgatggaaatgagtggaaacaaactttctggaaaaatcccatccgagctaagtaagttgagtaaattacagtttcttagcttgcactcca |
39306201 |
T |
|
| Q |
213 |
acgaattcaccggaaatatcccacatgaaattggaaatataagtctgctcttcatgttgaacttgagcaggaaccatttatcgggagaaatcccaaagag |
312 |
Q |
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|||||||| ||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
39306202 |
acgaattctccggaaatatcccacctgaaattgaaaatctcagtctgctcttcatgttgaacttgagcaggaaccatttatcaggagaaattccaaagat |
39306301 |
T |
|
| Q |
313 |
tattggaagattagctcaacttaatattgttgatttatcagataataacttcagtggaagcattcctaatgagctcggtaattgtaatcggttactaagc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
39306302 |
tattggaagattagctcaacttaatattgttgatttatcagataataacttcagtggaagcattcctaaagagcttagtaattgtaatcggttactaagc |
39306401 |
T |
|
| Q |
413 |
atgaacttaa |
422 |
Q |
| |
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||||||||| |
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|
| T |
39306402 |
ctgaacttaa |
39306411 |
T |
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