View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5993_low_13 (Length: 414)
Name: NF5993_low_13
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_13 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr2 (7 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] chr1 (10 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
| | |
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| [»] chr3 (7 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 29047261 - 29046863
Alignment:
| Q |
17 |
tgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgccaaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatcaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
29047261 |
tgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgccaaacaatcactttcataaataatgttgatgtagtctctttgattacaaaaatcaag |
29047162 |
T |
|
| Q |
117 |
acctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaaca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
29047161 |
acctgtctggttagcacgtaactcagctaataacgcatcacctccagattcatagtgagaaaaactagctattcaatctccatcgtggttgcaaacaaca |
29047062 |
T |
|
| Q |
217 |
ccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg-ggggatcaaatgagttaagaggcgtgatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
29047061 |
ccaccaacatctaaacaaccaaaatcttctagaaagctaccatcaatattgagtttaagtgtaccttccggggggatcaaatgagctaagaggcgtgatg |
29046962 |
T |
|
| Q |
316 |
agtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatgttgttcct |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
29046961 |
agtgtgggtccaaaccaagattggaatcgtaagaagtgcattcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaacgttgttcct |
29046863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 97 - 414
Target Start/End: Complemental strand, 2442391 - 2442071
Alignment:
| Q |
97 |
cttagattacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctc |
196 |
Q |
| |
|
|||||| |||||||||||| |||| | ||| || |||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||| |
|
|
| T |
2442391 |
cttagactacaaaaatcaacacctatttggataacacgtaactcagctaataacgcatcacctccaacttcatagtgagaaaaactagctatccagtctc |
2442292 |
T |
|
| Q |
197 |
catcgtggttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatc |
293 |
Q |
| |
|
||| ||||||| | ||||||||||||||| |||||||||| |||||| | ||| ||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
2442291 |
cattgtggttgtggacaacaccaccaacacctaaacaacccaaatctctaaaaaaactaccatcaatattgagtttaagagtaccttccggagggggatc |
2442192 |
T |
|
| Q |
294 |
aaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatctt |
393 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||||| ||| ||||| || |||| || ||| ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
2442191 |
taatgagctaagaggcatgatgaatgtgggtccaaatcaatattgggatagtaaaaaatgcattcatcatgtaacaaaaatgtctttcgcaccacatctt |
2442092 |
T |
|
| Q |
394 |
gaatacgccaatgttgttcct |
414 |
Q |
| |
|
|||| ||||| ||| |||| |
|
|
| T |
2442091 |
agatacaccaatattgatcct |
2442071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 10992970 - 10993104
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||| |||||||||||| |||||||||||| ||| ||||||| ||||| || | || | || |
|
|
| T |
10992970 |
agcataagtgtgcaaggtatgatcacgactatccataatcaggtcaactgctttcaaacaatcactctcacaaataatattgacataaccatttttacta |
10993069 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactc |
140 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
10993070 |
caaaaatcaagacctatctagatagcacgtaactc |
10993104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 2443335 - 2443255
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgtt |
86 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| || |||||||| ||||||||||| | ||| |||||||||| |
|
|
| T |
2443335 |
agcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatcattctcacaaataatgtt |
2443255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 4653705 - 4653292
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttag-att |
104 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||| ||| |||||||||| || ||| || ||| | | |
|
|
| T |
4653705 |
agcataagtgtgtaaggtatgatcacgaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttaacatagccttttattact |
4653606 |
T |
|
| Q |
105 |
acaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtgg |
204 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
4653605 |
acaaaaatcaagacctatctggatagcacgtaactcacctagtaacgcatcacctccagcttcatggtgagaaaaatcagctatccaatctccatcgtgg |
4653506 |
T |
|
| Q |
205 |
ttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatgag |
300 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| || |||||||||||||||||||||| |||||||| | | |||||||| |||||| |
|
|
| T |
4653505 |
ttgcgaacaacaccaccagcacctaaacaaccaaaatcttctaggtagctaccatcaatattgagtttgagtgtacccttcggaggggggatccaatgag |
4653406 |
T |
|
| Q |
301 |
ttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacg |
400 |
Q |
| |
|
|||||| | ||||||||||||||||||||| |||||| || ||||||| ||| |||| |||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4653405 |
ctaagagatgcgatgagtgtgggtccaaaccatgattgggatagtaagaaatgcattcattatgtaacaaaaatgtctttcgcaccacatcttgaatacg |
4653306 |
T |
|
| Q |
401 |
ccaatgttgttcct |
414 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
4653305 |
ccaatgttgatcct |
4653292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 9 - 371
Target Start/End: Original strand, 6571132 - 6571499
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||| || ||| ||||||||||| || ||||||||| ||| ||||||||||||| ||| || || | || |
|
|
| T |
6571132 |
agcataagtgtgtaagttatgatcacgaccagcaataatcaggtcaactgtttccgaacaatcaccctcacaaataatgttgacatagccttttctacta |
6571231 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
|||||||||||||| | ||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||| |
|
|
| T |
6571232 |
taaaaatcaagacctatttggatagcacataactcagctaacaacgcatcacctccagcttcatagtgagaaaaatcagccacccaatctccatcgtggt |
6571331 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg--ggggatcaaatgagtta |
303 |
Q |
| |
|
||||||||||||||||| | |||||| |||||| ||||| ||||||||||||||||||||||| || ||||||||||||| |||| || |||||| || |
|
|
| T |
6571332 |
tgcgaacaacaccaccatctcctaaactaccaaagtcttctagaaagctaccatcaatattgagcttgagtgtaccttccggaggggctcgaatgagcta |
6571431 |
T |
|
| Q |
304 |
agaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaa |
371 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||| || ||| ||| ||| || |||||||||||| |
|
|
| T |
6571432 |
agaggcgcgacgagtgtgggtctgaaccaagattgggatagtatgaaatgcattcgtcatgtaacaaa |
6571499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 8271229 - 8271506
Alignment:
| Q |
11 |
cataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagattaca |
107 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||| ||| ||||||||||||| || || || |||| |
|
|
| T |
8271229 |
cataagtgtgcaaggtatgatcacaaccagcagtaatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacataaccttttcttctaca |
8271328 |
T |
|
| Q |
108 |
aaa-atcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggtt |
206 |
Q |
| |
|
||| |||||||||| | ||| || | |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8271329 |
aaaaatcaagacctatttggataacgcgtaactcagctaataacgcatcacctccaacttcataatgagaaaaaccagctatccaatctccatcgtggtt |
8271428 |
T |
|
| Q |
207 |
gcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc |
284 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||| |||| ||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
8271429 |
gcgaacaacaccaccagcacctaagcaaccaaaaccttctagaaagctatcatcaatattgagtttgaatgtaccttc |
8271506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 37193022 - 37192749
Alignment:
| Q |
17 |
tgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgttgacgtagtc-tcttagattacaaaaat |
112 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| ||||||||||||| | | | ||||| ||||||||| |
|
|
| T |
37193022 |
tgtgcaagatatgatcacgaccatcaataatcaggttaactgtttccaaacaatcactttcaaaaataatgttgacacaaaccttttagactacaaaaat |
37192923 |
T |
|
| Q |
113 |
caagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaac |
212 |
Q |
| |
|
||| || | ||||| || |||||||||||| |||||||| |||||||||| |||||||||||| ||| || ||||||||| ||||||||||||||||| |
|
|
| T |
37192922 |
caaaacttatctggatatcacgtaactcagttaataacgtatcacctccaatttcatagtgagaaaaattagttatccaatcaccatcgtggttgcgaac |
37192823 |
T |
|
| Q |
213 |
aacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg |
286 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||| ||||| |||| |||||| |
|
|
| T |
37192822 |
aacaccaccaacacctaaacaactcaaatcttccagaaaactaccatcaacattgaatttaaatgtatcttccg |
37192749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 44440446 - 44440056
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| |||| |||| |||||||||||| ||| ||||||||||||| ||| || || | || |
|
|
| T |
44440446 |
agcataagtgtgcaaggtatgatcacgaccatcaataattgagtcatctgcttccaaacaatcactctcacaaataatgttgacatagccttttttacta |
44440347 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||| | |||| || ||| |||||| |||||||||| ||||| | || ||||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
44440346 |
caaaaatcaagacatatctgaataacacataactctgctaataacgtatcacatacaacttcatagtgagaaaaaccagctacctaatctccatcgtggt |
44440247 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaatgagtt |
302 |
Q |
| |
|
|||||||||| |||||| || |||||||| |||||||||| ||||||||||||||||||| |||||| ||| |||||| | |||| ||| |||||| |
|
|
| T |
44440246 |
tgcgaacaacgccaccatcacctaaacaatcaaaatcttctagaaagctaccatcaatatcgagtttgagtctacctttcggaggggtatccaatgagca |
44440147 |
T |
|
| Q |
303 |
aagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatctt |
393 |
Q |
| |
|
||||| || ||| ||||| | |||||||||| |||| || |||| || | | ||||||| || ||||| ||||||| ||||||||||| |
|
|
| T |
44440146 |
aagagacgcgataagtgttgatccaaaccaatattgagatagtaaaaaatacattcatcataaaataaaaatgtctttcgcaccacatctt |
44440056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 414
Target Start/End: Original strand, 5964399 - 5964615
Alignment:
| Q |
201 |
gtggttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaat |
297 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||| ||||||| ||||||||||||| ||||||| |||| |||||||||||| |||||||| ||| |
|
|
| T |
5964399 |
gtggatgcgaacaacaccaccaacatctaagcagccacaatcttctagaaagctaccattaatattgtgtttgagtgtaccttccagagggggatccaat |
5964498 |
T |
|
| Q |
298 |
gagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaat |
397 |
Q |
| |
|
||| ||||| | ||||||||| |||||| ||||||||| | || ||||||| ||| ||||| |||||||||||| ||||| ||| ||| ||||||| |
|
|
| T |
5964499 |
gagctaagaaatgcgatgagtgttggtccagaccaagatttggatagtaagaaatgcattcatcttgtaacaaaaagatcttttgcactacaccttgaat |
5964598 |
T |
|
| Q |
398 |
acgccaatgttgttcct |
414 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
5964599 |
acgtcaatgttgatcct |
5964615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 45036156 - 45036299
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| ||| ||||||||||||| || || || | || |
|
|
| T |
45036156 |
agcataagtgtgcaaggtatgatcatcaccatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacataaccttttttacta |
45036255 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataa |
149 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
45036256 |
caaaaatcaagacctacctggatagcacgtaactcagttaataa |
45036299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 5464663 - 5465074
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||||||||||||| | || || ||| ||||||||||| ||||||| |||| | | ||||||||||||| || ||| || | || |
|
|
| T |
5464663 |
agcataagtgtgcaaggtatgatcaaaatcaacaataataaggtcaactgcttccaaacaaccactctaacaaataatgttgacataatcttttttacta |
5464762 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
|||||||||||| || ||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5464763 |
caaaaatcaagaactatctggatagtacgtaactcagctaataacacatcacctccaacttcatagtgagcaaaacctgctatccaatctccatcgtggt |
5464862 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaatgagtt |
302 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||| |||||| | |
|
|
| T |
5464863 |
tgcgaacaacaccaccaacacctaaacaaccaaaatcttctagaaagctaccatcactattgagtttgagtgtaccttccgaagggggatccaatgagct |
5464962 |
T |
|
| Q |
303 |
aagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgcc |
402 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| || |||| || ||| ||||||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
5464963 |
aagaggtgtgatgagtgtgggtccaaaccgagattgggatagtaataaatgcattcatcatgtaataaaaagatctttcgcaccacatcttgaatacgcc |
5465062 |
T |
|
| Q |
403 |
aatgttgttcct |
414 |
Q |
| |
|
||||||| |||| |
|
|
| T |
5465063 |
aatgttgatcct |
5465074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 25828510 - 25828912
Alignment:
| Q |
19 |
tgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatcaa |
115 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||| |||||||||||| ||| | ||||||||||| ||| || || | |||||||||||| |
|
|
| T |
25828510 |
tgcaaggtatgatcacgaccaacaacaatcaggtcaactgctttcaaacaatcactctcacatataatgttgacatagccttttttactacaaaaatcaa |
25828609 |
T |
|
| Q |
116 |
gacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaac |
215 |
Q |
| |
|
||||| | ||| |||||||||| ||||||||||||||||||| |||| |||||||| |||| ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
25828610 |
gacctatatggatagcacgtaattcagctaataacgcatcacttccaacttcatagcgagaaaaaccagttatccaatctccatcatggttgcgaacaac |
25828709 |
T |
|
| Q |
216 |
accaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatgagttaagaggcgt |
311 |
Q |
| |
|
|||||||| | ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
25828710 |
accaccaatacctaaacaaccaaagtcttctaaaaagctaccatcaatattgagtttaagtgtaccttccggaggggggatccaatgagctaagaggcgc |
25828809 |
T |
|
| Q |
312 |
gatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatgttgtt |
411 |
Q |
| |
|
||||||||||||| ||||| | ||||| || ||||||| | | ||||||||||||||||||||||||| |||||||||||| ||||| |||||||| | |
|
|
| T |
25828810 |
gatgagtgtgggtacaaacaaggattgtcatagtaagaaatacattcatcatgtaacaaaaaggtctttcgcaccacatcttggatacgacaatgttgat |
25828909 |
T |
|
| Q |
412 |
cct |
414 |
Q |
| |
|
||| |
|
|
| T |
25828910 |
cct |
25828912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 406
Target Start/End: Complemental strand, 12501685 - 12501595
Alignment:
| Q |
316 |
agtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatg |
406 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| ||| ||||||| |||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
12501685 |
agtgtgggtccaaaccaggattgggatagtaagaaatgcattcatcatttaacgaaaaagtctttcgcaccacatcttgaatacgccaatg |
12501595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 10329082 - 10329256
Alignment:
| Q |
16 |
gtgtgcaaggtatgatcacgaccatcagtaagcaggtcaa---ctgccaaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| || || |||||||||| ||| ||| ||||||||| ||| || || | || |||||| |
|
|
| T |
10329082 |
gtgtgcaaggtatgatcacgaccatcaataatcaggtcaactccttcctaacaatcactctcacaaaaaatgttgacatagccttttttactataaaaat |
10329181 |
T |
|
| Q |
113 |
caagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagcta |
187 |
Q |
| |
|
||||||| | | ||||||||||||| | |||||| ||||||||||| || ||||||||| ||||| |||| |
|
|
| T |
10329182 |
taagacctatttacatagcacgtaactccgttaataatacatcacctccaattttatagtgagagaaacctgcta |
10329256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 406
Target Start/End: Complemental strand, 12527319 - 12527229
Alignment:
| Q |
316 |
agtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatg |
406 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||| ||| ||||||| |||| |||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
12527319 |
agtgtgggtccaaaccaggattgggatagtaagaaatgcattcatcatttaacgaaaaattctttcgcaccacatgttgaatacgccaatg |
12527229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 2887577 - 2887166
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| ||||||||| ||||||||||| || || ||| |||||||||||| ||||||| |||| || ||||||||||||| |||||| || | || |
|
|
| T |
2887577 |
agcataagtgtgcaag-tatgatcacgatcagcaataatcaggtcaactgcttccaaacaaccactctcgcaaataatgttgacatagtctttttcacta |
2887479 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||||| | ||| || |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
2887478 |
caaaaatcaagacctatttggatatcacgtaacgcagctaataacgcatcacctccagcatcatagtgagaaaaaccagctattcaatctctatcgtggt |
2887379 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatgagt |
301 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||| |||||| |
|
|
| T |
2887378 |
tgcgaacaacaccaccagcacctaaacaaccaaaatcttctaaaaagctaccatcaatattgagtttgagtaaaccttccgtaggggggatccaatgagc |
2887279 |
T |
|
| Q |
302 |
taagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgc |
401 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| || |||| || ||| |||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2887278 |
taagaggcgccatgagtgtgggtccaaaccaagattgggatagtaaaaaatgcattcatcacgtaacaaaaaggtctttcgcaccacatcttgaatacgc |
2887179 |
T |
|
| Q |
402 |
caatgttgttcct |
414 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
2887178 |
caatgttgatcct |
2887166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 16824207 - 16824610
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||| |||||||| |||||| || ||| |||||||||||| ||||||| |||| ||| ||||||||||||| || || || | || |
|
|
| T |
16824207 |
agcataagtgtgcaaagtatgatctcgaccagcaataatcaggtcaactgcttccaaacaa-cactctcacaaataatgttgacataaccttttttacta |
16824305 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
|||||||||||| | || || || ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||| ||||| |
|
|
| T |
16824306 |
taaaaatcaagacatatcaggataacacgtaactcagctaataacgcatcacctcccgcttcatagtgagaaaaatcagttatccaatctccattgtggt |
16824405 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc----cgggggatcaaatgagt |
301 |
Q |
| |
|
|||||||||||||| || || |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
16824406 |
tgcgaacaacaccatcagcacctaaacaaccaagatcttctagaaagctaccatcaatattgagtttcagtgtaccttctggaggggggatccaatgagc |
16824505 |
T |
|
| Q |
302 |
taagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgc |
401 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||| | || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16824506 |
taagaggcacgatgagtgtggttccaaatcaagattaggatagtaagaaatgcattcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgt |
16824605 |
T |
|
| Q |
402 |
caatg |
406 |
Q |
| |
|
||||| |
|
|
| T |
16824606 |
caatg |
16824610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 373
Target Start/End: Complemental strand, 11075870 - 11075502
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||| | || ||| || ||||||||| |||||||||||| ||| ||||||||||||| ||| || || | || |
|
|
| T |
11075870 |
agcataagtgtgcaaggtatgatcacgacaagcaataatcaagtcaactgcttccaaacaatcactctcacaaataatgttgacatagcctttttaacta |
11075771 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| |||||| |||||||| |
|
|
| T |
11075770 |
caaaaatcaagacctatctggatagcacgtaactcagctaataacgcatcacctccagcttcatagtgggaaaaaccagttatctaatctctatcgtggt |
11075671 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaatgagtt |
302 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| |||||||| |||||| | |
|
|
| T |
11075670 |
tgcgaacaacaccaccagcacctaaacaaccaaaatcttctagaaagctaccatcaatattgagtttgcgtgcactttccggagggggatccaatgagct |
11075571 |
T |
|
| Q |
303 |
aagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaa |
373 |
Q |
| |
|
|||||||| ||| ||||| || |||||||||||||| || ||||||| ||| |||||||||||| |||| |
|
|
| T |
11075570 |
aagaggcgcgat--gtgtgtgttcaaaccaagattgggatagtaagaaatgcattcatcatgtaactaaaa |
11075502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 8266765 - 8266437
Alignment:
| Q |
16 |
gtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaat |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| | ||| ||||||||||| | ||| || ||||| ||||||||| |
|
|
| T |
8266765 |
gtgtgcaaggtatgaccacgaccatcagtaagcatgtcaactgcttccaaacaatcattctcacaaataatgttggcatagccttttagactacaaaaat |
8266666 |
T |
|
| Q |
113 |
caagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaac |
212 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||||| ||| |||||||| ||||||||||||| |||| || |||| ||||||| ||||||||||| || |
|
|
| T |
8266665 |
caagacctatctggatagtacgtaactcagctaataatgcaccacctccaacttcatagtgagaaaaactagttatcgaatctccgtcgtggttgcgcac |
8266566 |
T |
|
| Q |
213 |
aacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc---gggggatcaaatgagttaagaggc |
309 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||| |||| |
|
|
| T |
8266565 |
aacaccaccagcacctaaataaccaaaatcttctaaaaagctaccatcaatattgagtttaagtgtaccttccaaacgggaatccaataaactaaaaggc |
8266466 |
T |
|
| Q |
310 |
gtgatgagtgtgggtccaaaccaagattg |
338 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8266465 |
gtgatgagtgtgggtccaaaccaagattg |
8266437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 39997604 - 39997881
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| || ||||||||||||||||||||| || ||| |||||||||||| |||||||||||| ||||||||||||||| | || || || | || |
|
|
| T |
39997604 |
agcataagtttgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactctcataaataatgttggcataaccttttttacta |
39997703 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||| |||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
39997704 |
caaaaatcaagacctgtctggatagcacgtcactcagctgataacacatcacctccaactttgtagtgagaaaaaccagctatccgatctgcatcgtggt |
39997803 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtacctt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39997804 |
tgcgaacaacaccaccaacatctaaacaactaaaatcttgtagaaagctaccatcaatattgagtttaagtatacctt |
39997881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 9427738 - 9427547
Alignment:
| Q |
17 |
tgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||| | ||| | ||||| |||||||||| |
|
|
| T |
9427738 |
tgtgcaaggtatgatcacgaccatcagtaagcatgtcaactgaatccaaacaatcactctcacaaataatgttggcatagcattttagactacaaaaatc |
9427639 |
T |
|
| Q |
114 |
aagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggtt |
206 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||| || ||||||||||||| ||| ||| ||| ||||||||||||||||| |
|
|
| T |
9427638 |
aagacctatctgaatagcacggaactcagctaataacgcatcacct-caacttcatagtgagaaaaatcagttattcaatctccatcgtggtt |
9427547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 18565878 - 18565693
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||| ||| |||||||||| | |||||||||||| ||| |||||||||||| |||||| || || || |
|
|
| T |
18565878 |
agcataagtgtgcaatgtataatcacgaccatcaataatcaggtcaactactttcaaacaatcactctcacaaataatgttgagatagtcttttggacta |
18565779 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatcca |
191 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
18565778 |
caaaaatcgagactaatctggatagcacgtaactcagctaataacacatcacctccagcttcatagtgaaaaaaatcagctatcca |
18565693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 26479469 - 26479372
Alignment:
| Q |
128 |
tagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaacaccaccaaca |
225 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||||| |||||||||| || |||||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
26479469 |
tagcacgcagctcagctaatagcgcatcacctccaacttcatagtgcgaaaaaccagctatcaaatctccataatggttgtgaacaacaccaccaaca |
26479372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 327
Target Start/End: Original strand, 3621083 - 3621307
Alignment:
| Q |
105 |
acaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtgg |
204 |
Q |
| |
|
||||||||||||| | |||| ||||||| |||||||| || || |||||||| || ||| | || ||| ||||||||||||||||||||||||||| |
|
|
| T |
3621083 |
acaaaaatcaagatccatctgaatagcacgcaactcagccaa--acacatcaccttcaactttaaagcaagaaaaaccagctatccaatctccatcgtgg |
3621180 |
T |
|
| Q |
205 |
ttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatgag |
300 |
Q |
| |
|
||| ||||| ||||||||||| | || || ||||| |||| | ||| |||||||||| || ||||||||| ||||||| || || || |||||| |
|
|
| T |
3621181 |
ttgggaacaccaccaccaacaccaaagcacccaaagccttctaaaaaactaccatcaacatcgagtttaagataaccttccaaagggaggctccaatgag |
3621280 |
T |
|
| Q |
301 |
ttaagaggcgtgatgagtgtgggtcca |
327 |
Q |
| |
|
||||||| |||||||||||||| |||| |
|
|
| T |
3621281 |
ttaagagacgtgatgagtgtggatcca |
3621307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 414
Target Start/End: Complemental strand, 7384282 - 7384127
Alignment:
| Q |
262 |
atattgagtttaagtgtaccttccgg----gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccct |
357 |
Q |
| |
|
||||||||||| |||||||||| || |||||| |||||| |||||| || ||||||||||||||||||| | ||||| || |||||| ||| | |
|
|
| T |
7384282 |
atattgagttttagtgtaccttgtggaggagggatccaatgagctaagagacgcgatgagtgtgggtccaaac-atgattgagataataagaaatgcatt |
7384184 |
T |
|
| Q |
358 |
catcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatgttgttcct |
414 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
7384183 |
catcatataacaaaaaagtctttcgcaccacatcttgaatacgcaaatgttgatcct |
7384127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 41940650 - 41941048
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||| |||||||||||| ||| ||||||||||||| ||| || ||| |||| |
|
|
| T |
41940650 |
agcataagtgtgcaaggtatgatcacgaccgtcaataatcaggtcaactgctttcaaacaatcactctcacaaataatgttgacatagccttttaaatta |
41940749 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41940750 |
caaaaatcaagacctattctgatagcacgtaactcagctaataacgcatcacctccagcttcatagtgagaaaaaccagctatccaatctccatcgtggt |
41940849 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatgagt |
301 |
Q |
| |
|
|||| |||||||||| || ||| | ||||||| ||||||||| |||||||||||| |||||||||||||||| || ||||| |||||| |
|
|
| T |
41940850 |
tgcg---aacaccaccaccagctatcc------aatcttctagaaagctatcatcaatattgattttaagtgtaccttccggatggaggatccaatgagc |
41940940 |
T |
|
| Q |
302 |
taagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgc |
401 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| | |
|
|
| T |
41940941 |
taagagatgtgacgagtgtgggtccaaaccaagattgggatagtaagaaatgcattcatcatgtaacaaaaagatctttcgcaccacatcttgaatacac |
41941040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 47924375 - 47924787
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||| ||| |||||||||||| |||||||||||| ||| ||||||||||||| || || || | || |
|
|
| T |
47924375 |
agcataagtgtgcaaggtatgatcatgatcatcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacttaaccttttttacta |
47924474 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||||| || || |||||||||| ||||||||||| |||||||||||| |||||||||| || |||||||| ||||||||||||| || | |
|
|
| T |
47924475 |
caaaaatcaagacctatccggatagcacgtaattcagctaataatgcatcacctccaacttcatagtgtgaaaaaccagcaatccaatctccattgtcgc |
47924574 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc----cgggggatcaaatgagt |
301 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
47924575 |
tacgaacaacaccgccaacacctaaacaaccaaaatcttctagaaagctgccatcaatattgagtttaagtgtaccttctagaggggggatccaatgagc |
47924674 |
T |
|
| Q |
302 |
taagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgc |
401 |
Q |
| |
|
||| || | |||||||||||||||||||||||||||| || ||||||| ||| ||||||| ||||||||| ||||||| ||| ||||| ||||||||| |
|
|
| T |
47924675 |
taaaagacacgatgagtgtgggtccaaaccaagattgggatagtaagaaatgcattcatcatctaacaaaaaagtctttcgcactacatcctgaatacgc |
47924774 |
T |
|
| Q |
402 |
caatgttgttcct |
414 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
47924775 |
caatgttgatcct |
47924787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 30 - 414
Target Start/End: Complemental strand, 54259373 - 54258983
Alignment:
| Q |
30 |
atcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatcaagacctgtctgg |
126 |
Q |
| |
|
||||| |||| || ||| |||||||||||| |||||||||||| ||| ||||||||||||| ||| || | | | |||||||||||||| ||||| |
|
|
| T |
54259373 |
atcacaaccagcaataaacaggtcaactgcttccaaacaatcactctcacaaataatgttgacatagccttatttactgtaaaaatcaagacctatctgg |
54259274 |
T |
|
| Q |
127 |
ttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaacaccaccaacat |
226 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||| ||||||| || |
|
|
| T |
54259273 |
atagcacgtaactcagctaacaacccatcacctccagct-catagtgagaaaaaccagctatccattctccaatgtggttgcgaacaataccaccatcac |
54259175 |
T |
|
| Q |
227 |
ctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatgagttaagaggcgtgatgagtgtgg |
322 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||||||||||| || |||||||||||| ||||| || |||||||||||||||| |||||| |||| |
|
|
| T |
54259174 |
ctaaacaaccagagtcttctggaaagctaccatcaatattgagcttgagtgtaccttccggaggggggctccaatgagttaagaggcgcgatgagagtgg |
54259075 |
T |
|
| Q |
323 |
gtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatgttgttcct |
414 |
Q |
| |
|
|||| |||||||||||| || ||| ||| ||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
54259074 |
gtccgaaccaagattgggatagtacgaaatgcattcatcatgtaacaaaaagatctttcgcaccacatcttgaatacaccaatgttgatcct |
54258983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 50945970 - 50945699
Alignment:
| Q |
17 |
tgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgttgacgtagtc---tcttagattacaaaa |
110 |
Q |
| |
|
||||||| |||||||||||||| || ||| |||||||| | ||||||||||||||||| ||||||||||||| ||||| | || | ||||||| |
|
|
| T |
50945970 |
tgtgcaacatatgatcacgaccaacaataatcaggtcaatcggttccaaacaatcactttcacaaataatgttgacatagtccttttttttactacaaaa |
50945871 |
T |
|
| Q |
111 |
atcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcga |
210 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| || |
|
|
| T |
50945870 |
atcaagacctatctggatagcgcgtaactcagctaataacgcatcaccttcagcttcatagtgagaaaaatcagctatccaatctccatcatggttgtga |
50945771 |
T |
|
| Q |
211 |
acaacaccaccaacatctaaacaaccaaaatcttccagaaagctacc---atcaatattgagtttaagtgta |
279 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||| | ||||||||| ||||||||||||||| |||||| |
|
|
| T |
50945770 |
acaacaccaccaacacctaaacaaccaaactattctaaaaagctaccatcatcaatattgagtttgagtgta |
50945699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 77 - 399
Target Start/End: Complemental strand, 25969457 - 25969134
Alignment:
| Q |
77 |
aaataatgttgacgtagtctcttagattacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgaga |
176 |
Q |
| |
|
||||||||||||| || ||||| | ||||||||||||||||| ||||| ||| |||||||||| |||||| | ||| | || ||||||||||||||| |
|
|
| T |
25969457 |
aaataatgttgacataacctcttttactacaaaaatcaagacctatctggatagtacgtaactcaactaatagcacatggcttcgagcttcatagtgaga |
25969358 |
T |
|
| Q |
177 |
taaaccagctatccaatctccatcgtggttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagt |
276 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||| ||||||||||||| ||||| |||||| ||| |
|
|
| T |
25969357 |
aaaaccaactatccaatctccatcgtgattgcgaacaacaccatcaccacctaaacaaccaaaatcttctagaaagctaccattaatatcgagtttgagt |
25969258 |
T |
|
| Q |
277 |
gtaccttccgg----gggatcaaatgagttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaa |
372 |
Q |
| |
|
|| |||||||| | |||| |||||| ||||||||| |||||||| ||| ||||||||| || || |||| || || |||||||||| |||| |
|
|
| T |
25969257 |
gt-ccttccggaggagagatccaatgagctaagaggcgcaatgagtgt--gtctaaaccaagactgagatagtaaaaaatgtatacatcatgtaataaaa |
25969161 |
T |
|
| Q |
373 |
aggtctttcacaccacatcttgaatac |
399 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25969160 |
tggtctttcacaccacatcttgaatac |
25969134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 40656256 - 40656565
Alignment:
| Q |
16 |
gtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgtt-gacgtagtctcttagattacaaaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||||| |||||||||||| ||| |||||||||| |||||| | || | |||||||| |
|
|
| T |
40656256 |
gtgtgcaaggtatgatcacgaccagcaataatcaggtcaactgctttcaaacaatcactctcacaaataatgtttgacgtaacattttctactacaaaaa |
40656355 |
T |
|
| Q |
112 |
tcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaa |
211 |
Q |
| |
|
||||||| | | ||| || ||||| ||||||||||||||||||||| || | ||||| |||| || ||||||| ||| ||||||| || ||||||||||| |
|
|
| T |
40656356 |
tcaagacatatatggataacacgttactcagctaataacgcatcacttctaacttcacagtg-gaaaaaccagttattcaatctctattgtggttgcgaa |
40656454 |
T |
|
| Q |
212 |
caacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccg--ggggatcaaatgagttaagaggc |
309 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
40656455 |
caacaccacgagcacctaaacaaccaaaatcttctagaaagttaccatcaatattgagtttgagtgtaccttccgaaagggatccaatgaactaagaggt |
40656554 |
T |
|
| Q |
310 |
gtgatgagtgt |
320 |
Q |
| |
|
| ||||||||| |
|
|
| T |
40656555 |
gcgatgagtgt |
40656565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 285
Target Start/End: Complemental strand, 24015908 - 24015774
Alignment:
| Q |
151 |
gcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaa |
250 |
Q |
| |
|
|||||||||||| ||||||| ||| || | ||||| |||||||||||||||||||||||||| ||||||||| |||| || || || |||| | || |
|
|
| T |
24015908 |
gcatcacctccaacttcatatgaagaaaagtcggctattcaatctccatcgtggttgcgaacaaccccaccaacacctaagcacccgaagccttctataa |
24015809 |
T |
|
| Q |
251 |
agctaccatcaatattgagtttaagtgtaccttcc |
285 |
Q |
| |
|
| ||||||||| ||||| || ||| ||||||||| |
|
|
| T |
24015808 |
aattaccatcaacattgaattcaagagtaccttcc |
24015774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 27184875 - 27184955
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgtt |
86 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| || |||||||| ||||||||||| | ||| |||||||||| |
|
|
| T |
27184875 |
agcatatgtgtgcaaggtatgatcacgaccatcaataatcaagtcaactgcttccaaacaatcattctcacaaataatgtt |
27184955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 134 - 409
Target Start/End: Original strand, 1758837 - 1759116
Alignment:
| Q |
134 |
gtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaacaccaccaacatctaaaca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || || ||||||| |
|
|
| T |
1758837 |
gtaactcagctaataacgcatcacctccaacttcatagtgagaaaaaccagctatccaatctccatcgtggttgcgaacaataccatcagcacctaaaca |
1758936 |
T |
|
| Q |
234 |
accaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc----cgggggatcaaatgagttaagaggcgtgatgagtgtgggtccaaa |
329 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
1758937 |
accaaaaccttctagaaagctaccatcaatattgagtttgagtgtaccttcgagaagggggatccaatgagttaagaggcgtgatgagtatgggtccaaa |
1759036 |
T |
|
| Q |
330 |
ccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatgttg |
409 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1759037 |
ccaagattggaatagtaagaaatgcattcatcatgtagcaaaaaggtctttcacaccacatcttgaatacaccaatgttg |
1759116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 12563303 - 12562893
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||| || ||| |||||||||| | |||||||||||| ||| |||||||||||| | | || || | || |
|
|
| T |
12563303 |
agcataagtgttcaaagtatgatcacgaccaacaataatcaggtcaactacttccaaacaatcactctcacaaataatgttgatatggccttttttacta |
12563204 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12563203 |
caaaaatcaagacctatctggatagcacgtaaattagataataacgcatcacctccagcttcatagtgaga-aaaccagctatccaatctccatcgtggt |
12563105 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc---cgggggatcaaatgagtt |
302 |
Q |
| |
|
||| |||| ||| |||| || ||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||| |||||| | |
|
|
| T |
12563104 |
tgcaaacagcactaccatcacctaaacaacaaaaatcttctagaaatctaccatcaatattgagtttgagtgtaccttcgggagggggatacaatgagct |
12563005 |
T |
|
| Q |
303 |
aagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgcc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || |||||| ||| |||||||||||||||||| ||||||| ||||||| |||||||| || |
|
|
| T |
12563004 |
aagaggcgtgatgagtgtgggtccaaacgaagattgggataataagaaatgcattcatcatgtaacaaaaagatctttcataccacatattgaatacacc |
12562905 |
T |
|
| Q |
403 |
aatgttgttcct |
414 |
Q |
| |
|
||||||| |||| |
|
|
| T |
12562904 |
aatgttgatcct |
12562893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 15243503 - 15243097
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgcc---aaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| ||| |||||||||| | ||||||||||| | | ||||||||||||| || || || | || |
|
|
| T |
15243503 |
agcataagtgtgcaaggtatgatcatgaccatcaataatcaggtcaactacttcaaaacaatcactcttacaaataatgttgacataaccttttctacta |
15243404 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||| ||||| | || | ||||||||||||| |||||||||||||||||| || |||||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
15243403 |
caaaaattaagacatatcaagatagcacgtaactcggctaataacgcatcaccttcaacttcatagtgcgaaaaaccagttatccaatctccatcgtggt |
15243304 |
T |
|
| Q |
206 |
tgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc---cgggggatcaaatgagtt |
302 |
Q |
| |
|
|| |||||||||| |||||| ||||||||||||||| || | |||||| ||||||||||||||||| ||||||||||| |||||||| |||||| | |
|
|
| T |
15243303 |
tgagaacaacacctccaacacctaaacaaccaaaattttttaaaaagctgccatcaatattgagtttgagtgtaccttctggagggggatccaatgagct |
15243204 |
T |
|
| Q |
303 |
aagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgcc |
402 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||||| || |||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
15243203 |
gagaggtgcgatgagtgtgggtccaaaccaggattgggatagtaagagatgcattcatcatgtaacaaaaaagtctttcggaccacatcttgaatacgtc |
15243104 |
T |
|
| Q |
403 |
aatgttg |
409 |
Q |
| |
|
||||||| |
|
|
| T |
15243103 |
aatgttg |
15243097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 104 - 397
Target Start/End: Complemental strand, 23589865 - 23589568
Alignment:
| Q |
104 |
tacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtg |
203 |
Q |
| |
|
||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||| || || ||| ||||||||||| ||||| |
|
|
| T |
23589865 |
tacaaaaataaagttctatctggatagcacgtaactcagctaataacgcatcacctccaacttcatagtgggaaaactcagttatccaatctctatcgta |
23589766 |
T |
|
| Q |
204 |
gttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttc----cgggggatcaaatga |
299 |
Q |
| |
|
||| ||||||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
23589765 |
gttacgaacaacaccaccagcacctaaacaaccaaaatcttctagaaagctgccatcaatattgagtttgagtgtaccttctgaaggggggatccaatga |
23589666 |
T |
|
| Q |
300 |
gttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaat |
397 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| |||||| || ||||||| ||| ||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
23589665 |
gttaaggggcgcgatgagtgtgggtccaaaccaggattgggatggtaagaaatgcattcatcatgtaacaaaaaagtctttcgcaccacatattgaat |
23589568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 28932335 - 28932545
Alignment:
| Q |
16 |
gtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaat |
112 |
Q |
| |
|
|||||||||||||||||||| ||| || ||| |||||||||||| |||||||||||| ||| ||||||||||||| || | || | |||||||| |
|
|
| T |
28932335 |
gtgtgcaaggtatgatcacggccagcaataatcaggtcaactgcttccaaacaatcactctcacaaataatgttgacataacatttttcactacaaaaac |
28932434 |
T |
|
| Q |
113 |
caagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaac |
212 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28932435 |
caagacctatcttgatagcacgtaactcagctaataacgcatcagcttcagcttcatagtgagaaaaaccaactatccaatctccatcgtggttacgaac |
28932534 |
T |
|
| Q |
213 |
aacaccaccaa |
223 |
Q |
| |
|
|||| |||||| |
|
|
| T |
28932535 |
aacaacaccaa |
28932545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 23810513 - 23810334
Alignment:
| Q |
61 |
aaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctc |
160 |
Q |
| |
|
||||||||||| ||| ||||||||||||| || || | | ||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
23810513 |
aaacaatcactctcacaaataatgttgacataacctttgttactacaaaaatcaagacctttctggatagcacgtaactcagctaacaacgcaccacctc |
23810414 |
T |
|
| Q |
161 |
cagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaacaccaccaacatctaaacaaccaaaa |
240 |
Q |
| |
|
|| |||||||||| || || ||| ||||||||||| ||||| ||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
23810413 |
caacttcatagtgggaaaactcagttatccaatctctatcgtagttacgaacaacaccaccagcacctaaacaaccaaaa |
23810334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 45260965 - 45261087
Alignment:
| Q |
103 |
ttacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgt |
202 |
Q |
| |
|
||||||||||||||||| ||| | ||||| | || |||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||| |||||| |
|
|
| T |
45260965 |
ttacaaaaatcaagacccatctagatagcatgcaaatcagctaataacgcatcacctccaacttcatagtgagaaaaatcagttatccaatcttcatcgt |
45261064 |
T |
|
| Q |
203 |
ggttgcgaacaacaccaccaaca |
225 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45261065 |
ggttgcgaacaacaccaccaaca |
45261087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 12607960 - 12607756
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||| ||| |||||| ||||| |||||||||||| || ||||||||||||| || || || | || |
|
|
| T |
12607960 |
agcataagtgtgcaagatatgattacgaccatcaataatcaggtctactgcttccaaacaatcact--cacaaataatgttgacataa-cttttttacta |
12607864 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggt |
205 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||| | ||||||| ||||| |||| ||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
12607863 |
caaaaatcaagacatatctgcatagcacgtaactcggttaataacacatcatttccaacttcataatgagaaaaaccagctatccaatctccatcgtggt |
12607764 |
T |
|
| Q |
206 |
tgcgaaca |
213 |
Q |
| |
|
| |||||| |
|
|
| T |
12607763 |
tacgaaca |
12607756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 1758720 - 1758802
Alignment:
| Q |
10 |
gcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgac |
89 |
Q |
| |
|
||||| ||||||||||||||||||| || | || ||| |||||||| ||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
1758720 |
gcataagtgtgcaaggtatgatcacaactagcaataatcaggtcaattgcttccaaacaatcactctcacaaataatgttgac |
1758802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 54872 - 55148
Alignment:
| Q |
17 |
tgtgcaaggtatgatcacgaccatcagtaagcaggtca---actgccaaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||| ||| |||||||||| || ||| || | ||| |||||||||| |
|
|
| T |
54872 |
tgtgcaaggtatgatcacgaccatcaataatcaggtcacctacttccaaacaatcactctcacaaataatgttcacatagcctttcagactacaaaaatc |
54971 |
T |
|
| Q |
114 |
aagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaaca |
213 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
54972 |
aagacctatctgaataacacgtaactcagctaataacaaatcacctccagcttcatagtgagaaaaaccagctatccaatctccatcgtgattgcaaaca |
55071 |
T |
|
| Q |
214 |
acaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttccggggg |
290 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
55072 |
acaccaccaacacctaaacaacccaaatcttctagaaaactaccatcaatattgagtttaagtgtatcttccagggg |
55148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 43445490 - 43445074
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgc---caaacaatcactttcataaataatgttgacgtagtctcttagat-- |
103 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || ||| ||||||||||| |||||||| ||| ||| ||||||||||||| |||| | || | |
|
|
| T |
43445490 |
agcataagtgtgcaaggtatgatcacgaccgacaataataaggtcaactgcttccaaacaattactctcacaaataatgttgacatagttttttttttac |
43445391 |
T |
|
| Q |
104 |
tacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtg |
203 |
Q |
| |
|
|| |||||||||||| | | ||| ||| ||||||||||| ||||||||||||||||||| ||||||||||| | ||| ||| |||||||| ||||||||| |
|
|
| T |
43445390 |
tataaaaatcaagacatatatggatagtacgtaactcagataataacgcatcacctccaacttcatagtgataaaaaacagatatccaatttccatcgtg |
43445291 |
T |
|
| Q |
204 |
gttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc-----gggggatcaaatg |
298 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||||||| |||| |
|
|
| T |
43445290 |
gttgcgaactacaccaccaacacctaaacaaccaaaatcttctagaaacttaccatcaatattgagtttgagtgtacctttcggatggggggattcaatg |
43445191 |
T |
|
| Q |
299 |
agttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaac-aaaaaggtctttcacaccacatcttgaat |
397 |
Q |
| |
|
|| ||| || ||||||||||||||||||||||||| ||||| || ||||||| ||| |||| | |||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
43445190 |
agctaaaagacgtgatgagtgtgggtccaaaccaaaattgggatagtaagaaatgcattcattgtttaacaaaaaaggtctttcgcacaacatcttgaat |
43445091 |
T |
|
| Q |
398 |
acgccaatgttgttcct |
414 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
43445090 |
ataccaatgttgatcct |
43445074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 53590163 - 53590567
Alignment:
| Q |
17 |
tgtgcaaggtatgatcacgaccatcagtaagcaggtcaactgcc---aaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatc |
113 |
Q |
| |
|
||||||||||||||||||||||| | ||| || ||||||| | ||||||||||| ||| ||||||||||||| ||||| || | | |||||||| |
|
|
| T |
53590163 |
tgtgcaaggtatgatcacgaccaataataaccatgtcaactccttcgaaacaatcactctcacaaataatgttgacaaagtcttttttactgcaaaaatc |
53590262 |
T |
|
| Q |
114 |
aagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaaca |
213 |
Q |
| |
|
|| | | ||| ||| ||| |||||||||| ||||| ||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53590263 |
aaagcttatctttttatcacataactcagctgataacacatcacctccaactttatagtgagaaaaaccagctatcaaatctccatcgtggttgcgaaca |
53590362 |
T |
|
| Q |
214 |
acaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtaccttcc----gggggatcaaatgagttaagaggc |
309 |
Q |
| |
|
||||||||| | |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||| | |||||||| ||||||||||||| | |
|
|
| T |
53590363 |
acaccaccacaacctaagcaaccaaaatcttgtagaaaactaccatcaatattgagtttgagtgtacctttcggaggggggatctaatgagttaagagac |
53590462 |
T |
|
| Q |
310 |
gtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacgccaatgttg |
409 |
Q |
| |
|
||||||| || |||||||| |||||| || ||||||| ||| ||||||||||||||||| |||||| |||| ||||||||||||| || |||||| |
|
|
| T |
53590463 |
acgatgagtatgagtccaaactaagattcagatagtaagaaatgcattcatcatgtaacaaaaatgtcttttacacaacatcttgaatacaccgatgttg |
53590562 |
T |
|
| Q |
410 |
ttcct |
414 |
Q |
| |
|
|||| |
|
|
| T |
53590563 |
gtcct |
53590567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 7320330 - 7320512
Alignment:
| Q |
59 |
ccaaacaatcactttcataaataatgttgacgtagtctcttagattacaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacc |
158 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||| ||| | ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
7320330 |
ccaaacaatcactctcactaataatgttgacaatgtc-cttttactacaaaaatcaagacctgtctggatagcacgtaattcagctaataacgcatcacc |
7320428 |
T |
|
| Q |
159 |
tccagcttcatagtgagataaaccagctatccaatctccatcgtggttgcgaacaacaccaccaacatctaaacaaccaaaatc |
242 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7320429 |
tccagcttcatagtgagaaaaaccagttatccagtctccatcgtggttgcgaacaacaccaccaacacctaaacaaccaaaatc |
7320512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 395
Target Start/End: Complemental strand, 7321235 - 7321160
Alignment:
| Q |
320 |
tgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttga |
395 |
Q |
| |
|
||||||||||||||||||| || |||| || ||| ||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
7321235 |
tgggtccaaaccaagattgagatagtaaaaaatgcattcatcatgtgacaaaaaggtctttcgcatcacatcttga |
7321160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 17508738 - 17508619
Alignment:
| Q |
9 |
agcataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgttgacgtagtctcttagatta |
105 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||| ||| || |||||||| |||||||| |||| ||| ||||||||| ||| | | | ||| | || |
|
|
| T |
17508738 |
agcataagtatgcaacgtatgatcacgaccatcaataatcaagtcaactgcttccaaacaagcactctcacaaataatgtagacatgattttttaaacta |
17508639 |
T |
|
| Q |
106 |
caaaaatcaagacctgtctg |
125 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
17508638 |
caaaaatcaagacctatctg |
17508619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 33460399 - 33460500
Alignment:
| Q |
105 |
acaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtgg |
204 |
Q |
| |
|
|||||| | |||||| |||||| ||||||| |||| ||| | || | |||||||||| ||||||||||||| || ||||| ||| ||||||||| |||| |
|
|
| T |
33460399 |
acaaaattaaagacccgtctggatagcacgcaacttagccagcaaagtatcacctccaacttcatagtgagaaaagccagccatctaatctccattgtgg |
33460498 |
T |
|
| Q |
205 |
tt |
206 |
Q |
| |
|
|| |
|
|
| T |
33460499 |
tt |
33460500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 50425993 - 50425908
Alignment:
| Q |
11 |
cataggtgtgcaaggtatgatcacgaccatcagtaagcaggtcaactg---ccaaacaatcactttcataaataatgttgacgtag |
93 |
Q |
| |
|
|||| |||| |||||||||||||||| || || ||| ||||||||||| ||||||||||||| | | |||||| |||||||||| |
|
|
| T |
50425993 |
cataagtgtacaaggtatgatcacgatcagcaataatcaggtcaactgcttccaaacaatcactcttacaaataacgttgacgtag |
50425908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 414
Target Start/End: Original strand, 12292142 - 12292454
Alignment:
| Q |
105 |
acaaaaatcaagacctgtctggttagcacgtaactcagctaataacgcatcacctccagcttcatagtgagataaaccagctatccaatctccatcgtgg |
204 |
Q |
| |
|
|||||||||||| ||| ||||| ||| ||| ||||||| ||||||| ||||||||||| ||||| |||||| ||| || |||| |||||||||| | | |
|
|
| T |
12292142 |
acaaaaatcaagccctatctggatagtacgcaactcagttaataacacatcacctccaaattcatggtgagaaaaatcaaatatctaatctccatc-ttg |
12292240 |
T |
|
| Q |
205 |
ttgcgaacaacaccaccaacatctaaacaaccaaaatcttccagaaagctaccatcaatattgagtttaagtgtacctt----ccgggggatcaaatgag |
300 |
Q |
| |
|
|||| ||||||| |||| || |||| || |||| ||||| ||||||||| ||| |||||||||||| ||| || ||| |||||||| ||| || |
|
|
| T |
12292241 |
ttgcaaacaacatcaccggcacctaagcactcaaagtcttctagaaagctatcattaatattgagtttgagtttatcttttggaggggggatccaataag |
12292340 |
T |
|
| Q |
301 |
ttaagaggcgtgatgagtgtgggtccaaaccaagattggaatcgtaagaagtgccctcatcatgtaacaaaaaggtctttcacaccacatcttgaatacg |
400 |
Q |
| |
|
|||||| || | ||||||||| |||| | || ||| | || | |||| ||| ||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
12292341 |
ctaagagacgcggtgagtgtggatccagtcgaaaattaggatattgagaaatgcattcatcatgtaacaaaaatctctttcgcaccacatcttgaatacg |
12292440 |
T |
|
| Q |
401 |
ccaatgttgttcct |
414 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
12292441 |
ccaatgttgatcct |
12292454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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