View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_14 (Length: 413)
Name: NF5993_low_14
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 38418506 - 38418827
Alignment:
| Q |
19 |
gtattttttgaggttctcaaatgagttttcactcaaaagaaaaagaatcggagattgggttaattatgatacaataaatagcataggtatacataacata |
118 |
Q |
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| T |
38418506 |
gtattttttgaggttctcaaatgagttttcactcaaaagaaaaagaatcggagattgggttaattatgatacaataaatagcataggtatacataacat- |
38418604 |
T |
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| Q |
119 |
acatgatcctatttgcaatttattgatttaattgagcnnnnnnn-caacatcaaaacatagaacatcatatgataccagtgtatgtaggtcattccggtc |
217 |
Q |
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| T |
38418605 |
----gatcctatttgcaatttattgatttaattgagcaaagaaaacaacatcaaaacatagaacatcatatgataccagtgtatgtaggtcattccggtc |
38418700 |
T |
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| Q |
218 |
ttatccaacacaaat-aaaagatgaccctaaatccaaaatctcaaagaccaatctaaacataataaaggaggcacatcaaatatcccacaaaggatgtga |
316 |
Q |
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| T |
38418701 |
ttatccaacacaaataaaaagatcaccctaaatccaaaatctcaaagaccaatctaaacataataaaggaggcacatcaaatatcccac-aaggatgtga |
38418799 |
T |
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| Q |
317 |
aatgagaataattagaacaacacattgt |
344 |
Q |
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| T |
38418800 |
aatgagaataattagaaaaacacattgt |
38418827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 38418849 - 38418885
Alignment:
| Q |
366 |
tgaaacctataatgtgattaataaattaaccagtatt |
402 |
Q |
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| T |
38418849 |
tgaaacctataatgtgattaataaattaaccagtatt |
38418885 |
T |
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