View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_15 (Length: 401)
Name: NF5993_low_15
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 45273813 - 45274198
Alignment:
| Q |
13 |
aatatataaagttagtgtagatgagaaaacttgtcgtataattgttaatatatttgttttgggacttaattatatattagatgtggtaactacagtc--- |
109 |
Q |
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| T |
45273813 |
aatatataaagttagtgtagatgagaaaacttgtcgtataattattaatatatttgttttgggacttaattatatattagatgtggtaactacagtcgtt |
45273912 |
T |
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| Q |
110 |
gaaaacgttttctctacaatga-----attaagaattgaacaccaaatcaaaagagaaatgaatgattaaattattgtttatttaactatatagagagag |
204 |
Q |
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| T |
45273913 |
gaaaacgttttctctacaataaatattattaagaattgaacacgaaatcagaagagaaatgaatgattaaattattgcttatttaactatatatagagag |
45274012 |
T |
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| Q |
205 |
gtttttaataaaattgaaaatgagaaaactaattttaagatataaaagttgcagacaacaattatgatgtctttctttctttnnnnnnnnttaagatgtc |
304 |
Q |
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| T |
45274013 |
gtttttaataaaattgaaaatgagaaaactaattttaagatataaaagttgcagacaacaattatgatgtctttctttctttaaaaaaaattatgatgtc |
45274112 |
T |
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| Q |
305 |
tgttttataaagaaaaatgtacatttaatgctataaaatttatatatgttgcccttacaactcaaaatttctggatccgttcttga |
390 |
Q |
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| T |
45274113 |
tgttttaaaaagaaaaatgtacatttaatgctataaaatttatatactctgcccttacaactcaaaatttttgaatccgtccttga |
45274198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 53633376 - 53633473
Alignment:
| Q |
135 |
aagaattgaacaccaaatcaaaagagaaatgaatgattaaattattgtttatttaactatatagagagaggtttttaataaaattgaaaatgagaaaa |
232 |
Q |
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| T |
53633376 |
aagaattgaatgcgaaatcacaagagagataaatgattaaatgattgtttatttaattttatatgaaaaggtttttaaagaaattgaaaattagaaaa |
53633473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 53635121 - 53635197
Alignment:
| Q |
156 |
aagagaaatgaatgattaaattattgtttatttaactatatagagagaggtttttaataaaattgaaaatgagaaaa |
232 |
Q |
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| T |
53635121 |
aagagagatgaatgattaaatgattgtttatttaattttatataaaaagttttttaatgaaatttaaaattagaaaa |
53635197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 26571699 - 26571659
Alignment:
| Q |
192 |
tatatagagagaggtttttaataaaattgaaaatgagaaaa |
232 |
Q |
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| T |
26571699 |
tatatagagagaggtttttattgagattgaaaatgagaaaa |
26571659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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