View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5993_low_16 (Length: 398)

Name: NF5993_low_16
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5993_low_16
NF5993_low_16
[»] chr5 (3 HSPs)
chr5 (65-384)||(31572025-31572351)
chr5 (19-66)||(31571749-31571796)
chr5 (342-384)||(11492547-11492588)
[»] chr7 (1 HSPs)
chr7 (100-338)||(24729939-24730177)
[»] chr2 (1 HSPs)
chr2 (19-68)||(27150287-27150336)
[»] chr8 (2 HSPs)
chr8 (19-70)||(6224320-6224372)
chr8 (100-182)||(17633518-17633605)
[»] chr6 (2 HSPs)
chr6 (20-70)||(24631339-24631389)
chr6 (218-338)||(23902403-23902523)
[»] chr4 (2 HSPs)
chr4 (19-68)||(24558130-24558179)
chr4 (19-70)||(37744137-37744188)
[»] chr1 (2 HSPs)
chr1 (22-59)||(12190718-12190755)
chr1 (31-68)||(39367172-39367209)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 65 - 384
Target Start/End: Original strand, 31572025 - 31572351
Alignment:
Q  65 tacaaacagcaagaaaagctattaaattaaaatagtcagaggtttaactctgtccaataactagtaaaaactcagcccaatataataagctgatgatttt 164  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31572025 tacaaacagcaagaaaagctaataaattaaaatattcagaggtttaactctgtccaataactagtaaaaactcagcccaatataataagctgaagatttt 31572124  T
Q  165 caaggttactactttaaatgtaatgcagtgnnnnnnngttttgtaccactaactccaagaaagaataagggataatgagcatgggcaattcgtaacacaa 264  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||    
T  31572125 caaggttactactttaaatgtaatgcagtgtttttttgttttgtaccactaactccaagaaagaataggggataatgagcatgggcaatttgtaacagaa 31572224  T
Q  265 agaaagaacaagagatttcggggagcacagatgcatacagaacacacaacttcatgcattccaattattgaaaataaagaattcatgg-------ttaca 357  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||       |||||    
T  31572225 agaaagaacaagagatttcggggagcacagatgcatactgaacacacaacttcatgcattccaattattgaaaataaataattcatggttacaacttaca 31572324  T
Q  358 atacataagaaactacacaatatgaag 384  Q
    |||||||||||||||||||||||||||    
T  31572325 atacataagaaactacacaatatgaag 31572351  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 31571749 - 31571796
Alignment:
Q  19 gttaaactcttgttcaacaataacaacactcactcataagagtttcta 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31571749 gttaaactcttgttcaacaataacaacactcactcataagagtttcta 31571796  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 11492547 - 11492588
Alignment:
Q  342 agaattcatggttacaatacataagaaactacacaatatgaag 384  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11492547 agaattca-ggttacaatacataagaaactacacaatatgaag 11492588  T

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Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 100 - 338
Target Start/End: Complemental strand, 24730177 - 24729939
Alignment:
Q  100 tcagaggtttaactctgtccaataactagtaaaaactcagcccaata-----taataagctgatgattttcaaggttactactttaaatgtaatgcagtg 194  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||     ||||||||||| ||||||||||||||||||||||||| |||||||       
T  24730177 tcagtggtttaactccgtccaataactagtaaaaactcagcccaataattagtaataagctgaagattttcaaggttactactttaaat-taatgcaa-- 24730081  T
Q  195 nnnnnnngttttgtaccactaactccaagaaagaataagggataatgagcatgggcaattcgtaacacaaagaaagaacaagagatttcggggagcacag 294  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||| | |||||| || |||||||    
T  24730080 gttttttgttttgtaccactaactccaagaaagaataagggataatgagcatgggcaattggtaacac--agagagaacaggggatttcaggtagcacag 24729983  T
Q  295 atgcatacagaacacacaacttcatgcattccaattattgaaaa 338  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||    
T  24729982 atgcatacagaacacacagcttcatgcattcaaattactgaaaa 24729939  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 27150336 - 27150287
Alignment:
Q  19 gttaaactcttgttcaacaataacaacactcactcataagagtttctaca 68  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  27150336 gttaaactcttgttcaacaataacaacactcactcataagacttcctaca 27150287  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 6224320 - 6224372
Alignment:
Q  19 gttaaactcttgttcaacaataacaacactcactc-ataagagtttctacaaa 70  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  6224320 gttaaactcttgttcaacaagaacaacactcactcaataagagtttctacaaa 6224372  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 17633605 - 17633518
Alignment:
Q  100 tcagaggtttaactctgtccaataactagtaaaaactcagcccaat-----ataataagctgatgattttcaaggttactactttaaa 182  Q
    ||||||||||||||| | ||||||||| |||||||||||||||| |     ||||||||| ||   ||||||||||||||||||||||    
T  17633605 tcagaggtttaactccgaccaataacttgtaaaaactcagcccagtaactaataataagccgaatgttttcaaggttactactttaaa 17633518  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 24631389 - 24631339
Alignment:
Q  20 ttaaactcttgttcaacaataacaacactcactcataagagtttctacaaa 70  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  24631389 ttaaactcttgttcaacaagaacaactctcactcataagattttctacaaa 24631339  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 338
Target Start/End: Complemental strand, 23902523 - 23902403
Alignment:
Q  218 tccaagaaagaataagggataatgagcatgggcaattcgtaacacaaagaaagaacaagagatttcggggagcacagatgcatacagaacacacaacttc 317  Q
    |||||||||||| || |||||||||| ||||||| || |||  || ||||||  ||| |  |||| |||||||| ||||| ||| |||||| ||| ||||    
T  23902523 tccaagaaagaaaaatggataatgagtatgggcagttggtataaccaagaaatgacagggaattttggggagcaaagatgtatatagaacatacagcttc 23902424  T
Q  318 atgcattccaattattgaaaa 338  Q
    |  ||||||||||||||||||    
T  23902423 agacattccaattattgaaaa 23902403  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24558179 - 24558130
Alignment:
Q  19 gttaaactcttgttcaacaataacaacactcactcataagagtttctaca 68  Q
    ||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  24558179 gttaagctcttgttcaacaataacaacactcactcataagacttcctaca 24558130  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 37744188 - 37744137
Alignment:
Q  19 gttaaactcttgttcaacaataacaacactcactcataagagtttctacaaa 70  Q
    |||||||||||||||||  | |||||||||||||| |||||||||| |||||    
T  37744188 gttaaactcttgttcaaacagaacaacactcactcgtaagagtttccacaaa 37744137  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 12190718 - 12190755
Alignment:
Q  22 aaactcttgttcaacaataacaacactcactcataaga 59  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12190718 aaactcttgttcaacaataacaacactcactcataaga 12190755  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 39367209 - 39367172
Alignment:
Q  31 ttcaacaataacaacactcactcataagagtttctaca 68  Q
    ||||||||||||||||||||||||||||| || |||||    
T  39367209 ttcaacaataacaacactcactcataagacttcctaca 39367172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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