View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5993_low_19 (Length: 386)

Name: NF5993_low_19
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5993_low_19
NF5993_low_19
[»] chr6 (5 HSPs)
chr6 (18-375)||(23130129-23130486)
chr6 (313-386)||(16766731-16766804)
chr6 (317-386)||(18367870-18367939)
chr6 (322-383)||(11352398-11352459)
chr6 (333-386)||(16488562-16488615)
[»] scaffold0036 (1 HSPs)
scaffold0036 (322-386)||(9708-9772)
[»] chr5 (6 HSPs)
chr5 (322-383)||(18592110-18592171)
chr5 (330-386)||(6401532-6401588)
chr5 (333-386)||(21814295-21814348)
chr5 (294-386)||(3966537-3966629)
chr5 (336-372)||(12641722-12641758)
chr5 (303-355)||(42893414-42893466)
[»] chr4 (4 HSPs)
chr4 (313-386)||(30982830-30982903)
chr4 (290-339)||(34594204-34594253)
chr4 (330-386)||(5414141-5414197)
chr4 (330-386)||(44132613-44132669)
[»] chr3 (6 HSPs)
chr3 (295-355)||(16192667-16192727)
chr3 (294-386)||(17005552-17005644)
chr3 (314-385)||(11665979-11666050)
chr3 (294-355)||(11252030-11252091)
chr3 (289-355)||(27505305-27505371)
chr3 (294-347)||(27277784-27277836)
[»] chr2 (6 HSPs)
chr2 (294-386)||(11223797-11223888)
chr2 (289-386)||(35056902-35056999)
chr2 (294-386)||(17776621-17776713)
chr2 (330-386)||(28524460-28524516)
chr2 (322-386)||(44860354-44860418)
chr2 (294-386)||(36756277-36756369)
[»] chr1 (6 HSPs)
chr1 (294-386)||(9828078-9828170)
chr1 (294-386)||(47989531-47989623)
chr1 (298-383)||(16164252-16164337)
chr1 (294-354)||(18190052-18190112)
chr1 (313-355)||(31015091-31015133)
chr1 (330-386)||(25934650-25934706)
[»] scaffold0136 (1 HSPs)
scaffold0136 (303-386)||(3791-3874)
[»] chr7 (3 HSPs)
chr7 (303-386)||(25822689-25822772)
chr7 (298-386)||(6630849-6630937)
chr7 (289-333)||(38134334-38134378)
[»] scaffold0123 (1 HSPs)
scaffold0123 (294-386)||(44458-44550)
[»] scaffold0019 (1 HSPs)
scaffold0019 (294-386)||(71759-71851)
[»] scaffold0003 (1 HSPs)
scaffold0003 (313-385)||(241629-241701)
[»] chr8 (5 HSPs)
chr8 (294-386)||(26902108-26902200)
chr8 (294-385)||(29447479-29447570)
chr8 (313-386)||(11927038-11927111)
chr8 (345-386)||(28384978-28385019)
chr8 (313-385)||(15816081-15816153)
[»] scaffold0512 (1 HSPs)
scaffold0512 (289-355)||(4975-5041)
[»] scaffold0008 (1 HSPs)
scaffold0008 (336-386)||(263347-263397)


Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 23130129 - 23130486
Alignment:
Q  18 gatcttgatacattgtatattccttcattaacaagctctacaacaaagtttcttggattgtcattgccaccatttttaaggattgatattgttccagaag 117  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23130129 gatcttgatacattgtatattccatcgttaacaagctctacaacaaagtttcttggattgtcattgccaccatttttgaggattgatattgttccagaag 23130228  T
Q  118 ctttccaaggaagtattaatcaagaatctggcaaggtaagccatataagtaatagaaattgtacttcaattctaattgtgtagtatgtatcccataaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23130229 ctttccaaggaagtattaatcaagaatctggcaaggtaagccatataagtaatagaaattgtacttcaattctaattgtgtagtatgtatcccataaata 23130328  T
Q  218 tttttattaaccaccaagatgagatatggttgcatttagctcaccaagcgattcactttagaatacaaaccgctacgaagcacatacactccacagatta 317  Q
    || ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  23130329 ttcttattaaccacaaagatgaaatatggttgcatttagctcatcaagcgattcactttagaatacaaaccactgcgaagcacatacactcctcagatta 23130428  T
Q  318 ggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacata 375  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  23130429 ggcatgtcccgatatcagacacgtgtcgtgtctgacaccaacatgacactgacacata 23130486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 16766804 - 16766731
Alignment:
Q  313 gattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||| ||||||| |||| ||||||||||||||| |||||  ||| ||||| ||||| | |||||||||||    
T  16766804 gattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactg 16766731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 18367939 - 18367870
Alignment:
Q  317 aggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||| ||||||  ||||||||| |||| |||||||||||  ||| ||||| |||||||||||||||||||    
T  18367939 aggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactg 18367870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 11352459 - 11352398
Alignment:
Q  322 tgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattaca 383  Q
    ||||| |||||| |||||||||||||||||| ||  ||| |||| ||| |||||||||||||    
T  11352459 tgtcctgatgtcggacacgtgttgtgtctgataccgacacgacattgatacatataattaca 11352398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 16488562 - 16488615
Alignment:
Q  333 cagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    ||||||||||| ||||| |||||  ||| ||||| |||||||||||||||||||    
T  16488562 cagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactg 16488615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 9708 - 9772
Alignment:
Q  322 tgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    ||||||||||||||||| |||| ||||||||||| |||| ||||| |||||||||||||||||||    
T  9708 tgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactg 9772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 18592171 - 18592110
Alignment:
Q  322 tgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattaca 383  Q
    |||||||||||||||||||||||||||| |||||  ||| ||||| | ||||||||||||||    
T  18592171 tgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattaca 18592110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 6401588 - 6401532
Alignment:
Q  330 tgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||||||||| ||||| |||||  ||| ||||| |||||||||||||||||||    
T  6401588 tgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactg 6401532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 21814348 - 21814295
Alignment:
Q  333 cagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    ||||||||||| ||||| |||||  ||| ||||| |||||||||||||||||||    
T  21814348 cagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactg 21814295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 3966629 - 3966537
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  ||||||| | |||||| | ||||||  |||  ||||| ||||||||| |||||  ||| ||||| |||||||||||||||||||    
T  3966629 gaagcacggacactcctcggattagacgtgtccctctgttggacacatgttgtgtccgacactgacacgacaccgacacatataattacactg 3966537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 12641758 - 12641722
Alignment:
Q  336 acacgtgttgtgtctgacacaaacatgacactgacac 372  Q
    |||||||||||||||||||| |||| |||||||||||    
T  12641758 acacgtgttgtgtctgacaccaacacgacactgacac 12641722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 42893466 - 42893414
Alignment:
Q  303 acactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacac 355  Q
    ||||||| || ||||||| ||||| | |||| |||||||||||||||||||||    
T  42893466 acactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacac 42893414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 30982830 - 30982903
Alignment:
Q  313 gattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||| ||||||| |||| ||||||||| |||||||||||  ||| ||||| ||||| |||||||||||||    
T  30982830 gattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactg 30982903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 34594204 - 34594253
Alignment:
Q  290 ctacgaagcacatacactccacagattaggcatgtcccgatgtcagacac 339  Q
    |||||||||||||||||| | || ||||||||||||||  ||||||||||    
T  34594204 ctacgaagcacatacacttctcatattaggcatgtccctgtgtcagacac 34594253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 5414141 - 5414197
Alignment:
Q  330 tgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||||||||| ||||| |||||  ||| ||||| || ||||||||||||||||    
T  5414141 tgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactg 5414197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 44132613 - 44132669
Alignment:
Q  330 tgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||||| ||||||||  ||||| |||| ||||| |||||||||||||| ||||    
T  44132613 tgtcagacacatgttgtgttcgacaccaacacgacaccgacacatataattatactg 44132669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 16192667 - 16192727
Alignment:
Q  295 aagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacac 355  Q
    ||||||| ||||||| || |||||| |||||||| |||||||||||||| |||||||||||    
T  16192667 aagcacaaacactcctcatattaggtatgtcccggtgtcagacacgtgtcgtgtctgacac 16192727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 17005552 - 17005644
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||| ||||||| | ||||||   ||||| | ||||||||||||||| |||||||||| ||||  |||| ||||| |||||||||||||    
T  17005552 gaagcacaaacactcctcggattagaggtgtcctggtgtcagacacgtgttatgtctgacaccaacacaacaccgacacttataattacactg 17005644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 385
Target Start/End: Complemental strand, 11666050 - 11665979
Alignment:
Q  314 attaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacact 385  Q
    ||||||| ||| ||||| |||||||||||| |||||| |||  |||| ||||| ||||||||||||||||||    
T  11666050 attaggcgtgttccgatatcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattacact 11665979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 11252091 - 11252030
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacac 355  Q
    |||||||| ||||||| | |||||||| ||| |||||| | |||||||||||||||||||||    
T  11252091 gaagcacagacactcctcggattaggcgtgttccgatgccggacacgtgttgtgtctgacac 11252030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 27505371 - 27505305
Alignment:
Q  289 gctacgaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacac 355  Q
    |||| |||||||  ||||||| | |||||||||||||||| |||| ||||||||| ||||| |||||    
T  27505371 gctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacac 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 27277784 - 27277836
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtg 347  Q
    |||||||||||||||| | |||||| ||||||||| |||| |||||||||||||    
T  27277784 gaagcacatacactcctcggattagacatgtcccg-tgtcggacacgtgttgtg 27277836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 11223797 - 11223888
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  ||||||| |||||||||| ||||||| ||||||||| |||| ||||| |||||  ||||||||| ||||| | |||||||||||    
T  11223797 gaagcacggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactg 11223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 35056999 - 35056902
Alignment:
Q  289 gctacgaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||| |||||||  ||||||| |||||||||| |||  |  |||| ||||||||| ||||| |||||  ||| ||||| |||||||||||||||||||    
T  35056999 gctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactg 35056902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 17776713 - 17776621
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  ||||||| | |||||||| |||||||| ||| |||||  || |||||  ||||  || ||||||||||||||||||||||||||    
T  17776713 gaagcacggacactcctcggattaggcctgtcccgaggtcggacacacgtcgtgtccaacaccgacttgacactgacacatataattacactg 17776621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 28524516 - 28524460
Alignment:
Q  330 tgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||||||||||||||| ||||| ||||  |||  |||||||||||||||||||    
T  28524516 tgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattacactg 28524460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 44860418 - 44860354
Alignment:
Q  322 tgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||||||| ||||| ||| |||||  |||| |||| ||||| |||||||||||||||||||    
T  44860418 tgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactg 44860354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 36756277 - 36756369
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||| |||||||   |||||||| |||  || |||| |||| |||||||||  ||||| |||| ||||| ||||| |||||||||||||    
T  36756277 gaagcacagacactcctaggattaggcgtgttgcggtgtcggacatgtgttgtgttcgacactaacacgacaccgacacttataattacactg 36756369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 9828170 - 9828078
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  ||||||| | |||||| | ||||||| |||| ||||||||| |||||||||||  ||| ||||| |||||||| ||||||||||    
T  9828170 gaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactg 9828078  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 47989623 - 47989531
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  ||||||| | |||||||| ||||||||||||||||| |||| ||||| |||||  ||| ||||| ||||| | |||||||||||    
T  47989623 gaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactg 47989531  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 383
Target Start/End: Original strand, 16164252 - 16164337
Alignment:
Q  298 cacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattaca 383  Q
    |||||||||||  | |||||||| ||||| | |||| ||||||||||| |||  |||| |||| |||| |||||||||||||||||    
T  16164252 cacatacactcttcggattaggcgtgtcctggtgtcggacacgtgttgcgtccaacaccaacacgacaatgacacatataattaca 16164337  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Original strand, 18190052 - 18190112
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgaca 354  Q
    ||||| |||||||||| | |||||||  ||||||| |||| ||||||||||||||||||||    
T  18190052 gaagcgcatacactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgtctgaca 18190112  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 31015133 - 31015091
Alignment:
Q  313 gattaggcatgtcccgatgtcagacacgtgttgtgtctgacac 355  Q
    |||||||| |||||||||||||||||||||| ||||| |||||    
T  31015133 gattaggcgtgtcccgatgtcagacacgtgtcgtgtccgacac 31015091  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 25934706 - 25934650
Alignment:
Q  330 tgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||||||||| ||||| |||||  ||| || || |||||||||||||||||||    
T  25934706 tgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactg 25934650  T

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Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 3791 - 3874
Alignment:
Q  303 acactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    ||||||| | |||||||| |||| ||||||| |||| |||| ||||| ||||| |||| ||||||||||| | |||||||||||    
T  3791 acactcctcggattaggcgtgtctcgatgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactg 3874  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 25822772 - 25822689
Alignment:
Q  303 acactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||| || ||  | | ||||| ||||| | |||||||||||    
T  25822772 acactccttagattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacactg 25822689  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 6630849 - 6630937
Alignment:
Q  298 cacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||| ||||||| |||||||||  ||||  | |||| | ||||||||||||| ||||| |||| ||||  |||||||||||||||||||    
T  6630849 cacacacactcctcagattaggtgtgtcttggtgtcgggcacgtgttgtgtccgacaccaacacgacatcgacacatataattacactg 6630937  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 38134334 - 38134378
Alignment:
Q  289 gctacgaagcacatacactccacagattaggcatgtcccgatgtc 333  Q
    |||| |||||||||||||||| | |||||||| ||||||||||||    
T  38134334 gctatgaagcacatacactcctcggattaggcgtgtcccgatgtc 38134378  T

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Target: scaffold0123 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 44458 - 44550
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||| ||||| | |||||||  ||||||||  |||| |||||||||||||||  ||||  ||| || || |||||||||||||||||||    
T  44458 gaagcacagacacttctcagattaaccatgtcccagtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactg 44550  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 71851 - 71759
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  ||||||| | |||||| | ||||||| |||| ||||||||||||||| |||||  ||| |||||||||||   |||||||||||    
T  71851 gaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacactgacactagtaattacactg 71759  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 241701 - 241629
Alignment:
Q  313 gattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacact 385  Q
    |||||||| ||||||| |||| ||||||||| ||||| ||||| |||| ||||| |||||  |||||||||||    
T  241701 gattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacact 241629  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 26902108 - 26902200
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||  ||||||| ||||| |||| ||||||  || ||||||||||| ||||| |||||  | | ||||| |||||||||||||||||||    
T  26902108 gaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactg 26902200  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 29447570 - 29447479
Alignment:
Q  294 gaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacact 385  Q
    |||||||  ||||||| | |||||| | ||||||| |||| ||||| ||| |||||||||||  ||| |||||  |||||||||||||||||    
T  29447570 gaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacact 29447479  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 11927038 - 11927111
Alignment:
Q  313 gattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||| |||| ||||||  || || ||| |||| |||||| |||| ||||| |||||||||||||||||||    
T  11927038 gattaggcgtgtctcgatgttggatacatgtcgtgtatgacaccaacacgacaccgacacatataattacactg 11927111  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 28384978 - 28385019
Alignment:
Q  345 gtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||||||  ||||||||| |||||||||||||||||||    
T  28384978 gtgtctgacactgacatgacaccgacacatataattacactg 28385019  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 15816081 - 15816153
Alignment:
Q  313 gattaggcatgtcccgatgtcagacacgtgttgtgtctgacacaaacatgacactgacacatataattacact 385  Q
    |||||||| ||||||| |||| ||  ||||| ||||| ||||| |||| ||||| ||||| ||||||||||||    
T  15816081 gattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacact 15816153  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 4975 - 5041
Alignment:
Q  289 gctacgaagcacatacactccacagattaggcatgtcccgatgtcagacacgtgttgtgtctgacac 355  Q
    |||| |||||||| ||||||| | ||||||||||||| | ||||| ||||||||| ||||| |||||    
T  4975 gctatgaagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacac 5041  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 263347 - 263397
Alignment:
Q  336 acacgtgttgtgtctgacacaaacatgacactgacacatataattacactg 386  Q
    |||||||| |||||||||||  ||| ||||||||||| |||||||||||||    
T  263347 acacgtgtcgtgtctgacaccgacacgacactgacacttataattacactg 263397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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