View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_2 (Length: 704)
Name: NF5993_low_2
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 9248271 - 9247739
Alignment:
| Q |
19 |
atgtttagtgtttgtttgtgtctctggtatagaagattctcatttatcttctcagtgttaattgtcacagcaaatttatttaactttatgaatgaatgat |
118 |
Q |
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| T |
9248271 |
atgtttagtgtttgtttgtgtctctggtatagaagattctcatttatcttctcagtgttaattgtcacagcaaatttatttaactttatgaatgaatgat |
9248172 |
T |
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| Q |
119 |
ttctttgaaattatataaagtggttgattgataccatagtttattgtacttacagtaaaatggtggaatggttaagctgatgtagatattaacagggtta |
218 |
Q |
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| T |
9248171 |
ttctttgaaattatataaagtggttgattgataccatagtttattgtacttacagtaaaatggtagaatggttaagctgatgtagatattaacagggtta |
9248072 |
T |
|
| Q |
219 |
aatttatgtaattgaaagtatattactatgcatgcatttctttcgacaagttcatctgagtggtaaggaactcaaacaacttaagatagtggttagaggt |
318 |
Q |
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| T |
9248071 |
aatttatgtaattgaaagtatattactatgcatgcatttctttcgacaagttcatctgagtggtaaggaactcaaacaacttaagatagtggttagaggt |
9247972 |
T |
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| Q |
319 |
gaaaatcctgactcttatttatagaaaacactgttaaacggagatcagacgctgttaagcggcagtagatagtttgtacctggaatctggttaccgaaaa |
418 |
Q |
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| T |
9247971 |
gaaaatcctgactcttatttatagaaaacactgttaaacggagatcagacgctgttaagcggcagtagatagtttgtacctggaatctggttactgaaaa |
9247872 |
T |
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| Q |
419 |
acaatgtttgcaattccaacttaaaatacaatgcaaggttttcattacatgcattttgcaacataagaagaaacaaaattagtttgtcagatgtgtggct |
518 |
Q |
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| T |
9247871 |
acaatgtttgcaattccaacttaaaatacaatgcaaggttttcattacatgcattttgcaacataagaagaaacaaaattagtttgtcagatgcgtggct |
9247772 |
T |
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| Q |
519 |
gcaatgacagattgtccttgattgatcacgagg |
551 |
Q |
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| T |
9247771 |
gcaatgacagattgtccttgattgatcatgagg |
9247739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 619 - 690
Target Start/End: Complemental strand, 9247671 - 9247600
Alignment:
| Q |
619 |
accgtctttaaatgatgcagtgtgaaggtgtttggagtttctgcaaagtcaatgcagtgttcttatgatgat |
690 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9247671 |
accgtctttaaatgatgcagtgtgaaggtatttggagtttctgcaaagtcaatgcagtgttcttatgatgat |
9247600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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