View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_20 (Length: 379)
Name: NF5993_low_20
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 52188696 - 52189057
Alignment:
| Q |
1 |
attgtgacatagatattatttcttgaattgagcttaaaatcatagacacaattcattaaatcctatttttgtgtgacagtaggaagatcacgctcttact |
100 |
Q |
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| T |
52188696 |
attgtgacatagatattatttcttgaattgagcttaaaatcatagacacaattcattaaatcctattattgtgtgacagtaggaagatcacgctcttact |
52188795 |
T |
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| Q |
101 |
cgaaacaatgatcttaaatttcgatatttatgtttgtgtatgaatggcactgtcctcttgctaatttaggatataaatactgatttttcttcttgccaag |
200 |
Q |
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| T |
52188796 |
cgaaacaatgatcttaaatttcgatatttatgtttgtgtatgaatggcactgtcctcttgctaatttaggatataaatactgatttttcttcttgccaag |
52188895 |
T |
|
| Q |
201 |
tgggttactcatgtgttagggtctagataatatggatgatgtagttgaagttgagaatgaggagattaaatatgtattggtccctagatttatgttccgt |
300 |
Q |
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| T |
52188896 |
tgggttactcatgtgttagggtctagataatatggatgatgtagttgaagttgagaatgaggagattaaatatgtattggtccctagatttatgttccgt |
52188995 |
T |
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| Q |
301 |
gcaatgatttattgacatgtttgatcaacaaattagaattttgtttacctacatgcaggaag |
362 |
Q |
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| T |
52188996 |
gcaatgatttattgacatgtttgatcaacaaattagaattttgtttacctacatgcaggaag |
52189057 |
T |
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