View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_24 (Length: 364)
Name: NF5993_low_24
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 69 - 301
Target Start/End: Original strand, 50326187 - 50326419
Alignment:
| Q |
69 |
tattacatgtgcttgagtaattatttattctgttgcagaaaaatagtgcagttgctggagcaatcactggtgcagcacttgcatgtacatcagataacac |
168 |
Q |
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| T |
50326187 |
tattacatgtgcttgagtaattatttattctgttgcagaaaaatagtgcagttgctggagcaatcactggagcagcacttgcatgtacatcagataacac |
50326286 |
T |
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| Q |
169 |
ttctcatgaacagattgcgcaatgtgctattaccggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaacctgttgggatttttag |
268 |
Q |
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| T |
50326287 |
atctcatgaacagattgcgcaatgtgctattaccggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaacctgttgggatttttag |
50326386 |
T |
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| Q |
269 |
ccttgtttttaatcttccaatttgtgacattta |
301 |
Q |
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| T |
50326387 |
ccttgtttttaatcttccaatttgtgacattta |
50326419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 50326457 - 50326513
Alignment:
| Q |
296 |
catttagcaactatttctttctgaatttgtagttctctttttcaaatgtgttgtctc |
352 |
Q |
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| T |
50326457 |
catttagcaactatttctttctgaatttgtagttctctttttcaaatgtgttgtctc |
50326513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 13202440 - 13202291
Alignment:
| Q |
102 |
tgcagaaaaatagtgcagttgctggagcaatcactggtgcagcacttgcatgtacatcagataacacttctcatgaacagattgcgcaatgtgctattac |
201 |
Q |
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| T |
13202440 |
tgcagaaaaacagtgcagttgctggagcaatcaccggggctacccttgcacttacattggaagactccacacatgaacatgttgttcaatgtgctatcac |
13202341 |
T |
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| Q |
202 |
cggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaa |
251 |
Q |
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| T |
13202340 |
tggagctgcaatctcaactgttgcaaatcttctcaaagggattttctaaa |
13202291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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