View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5993_low_27 (Length: 344)
Name: NF5993_low_27
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 28 - 334
Target Start/End: Complemental strand, 2523297 - 2522991
Alignment:
| Q |
28 |
ctgctcaggctatcatgggatctgatcaaattcagatacaagttccaaatgagaaagtgagaaactgataatatccgtctatttatgttttacatttatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2523297 |
ctgctcaggctatcatgggatctgatcaaattcagatacaagttccaaatgagaaagtgagaaactgataatatccgtctatttatgttttacatttatt |
2523198 |
T |
|
| Q |
128 |
catgttttatgtaacatagctttgaatcacaaaatttatacaggtacgattaatcattgggaagggtgggtaaagtgtaaacaattaatttatttcatta |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2523197 |
catgttttatgtaacatagctttgaatcacaaaatctatacaggtaggattaatcattgggaagggtgggtaaagtgtaaacaattaatttatttcatta |
2523098 |
T |
|
| Q |
228 |
tgactaaacacaagacataaccaagccattctcaaataacttctcccgcattacattaattatatttcctcgcccattacataaattatatttcatcgtt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2523097 |
tgactaaacacaagacataaccaagccattctcaaataacttctccctcattacatcaattatatttccacgcccattacataaattatatttcatcgtt |
2522998 |
T |
|
| Q |
328 |
ttctctg |
334 |
Q |
| |
|
||||||| |
|
|
| T |
2522997 |
ttctctg |
2522991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 2535937 - 2536062
Alignment:
| Q |
47 |
atctgatcaaattcagatacaagttccaaatgagaaagtgagaaactgataatatccgtctatttatgttttacatttattcatgttttatgtaacatag |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| ||||||||||||||| |||| ||| |
|
|
| T |
2535937 |
atctgatcaaattcagatacaagttccaaatgagaaggtgagaaaattataatatccgtcaatttatgttttccatttattcatgtttaggttaacgtag |
2536036 |
T |
|
| Q |
147 |
ctttgaatcacaaaatttatacaggt |
172 |
Q |
| |
|
|| |||| |||||||||||| ||||| |
|
|
| T |
2536037 |
ctctgaagcacaaaatttatgcaggt |
2536062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 2523710 - 2523604
Alignment:
| Q |
67 |
aagttccaaatgagaaagtgagaaactgataatatccgtctatttatgttttacatttattcatgttttatg-taacatagctttgaatcacaaaattta |
165 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||| | |
|
|
| T |
2523710 |
aagttccaaatgagaaggtgagaaacttgaaatatccgtcaatttatgttttccatttattcatgttttatgttaacgtagctttgaatctcaaaattca |
2523611 |
T |
|
| Q |
166 |
tacaggt |
172 |
Q |
| |
|
| ||||| |
|
|
| T |
2523610 |
tgcaggt |
2523604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 2536439 - 2536492
Alignment:
| Q |
114 |
gttttacatttattcatgttttatg-taacatagctttgaatcacaaaatttat |
166 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
2536439 |
gttttacatttattcatgttttatgttaacgtagctttgaatcacaaaatttat |
2536492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 2536385 - 2536438
Alignment:
| Q |
36 |
gctatcatgggatctgatcaaattcagatacaagttccaaatgagaaagtgaga |
89 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
2536385 |
gctatcgttggatctgatcaaattcaaatacaagttccaaatgagaaggtgaga |
2536438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 1769782 - 1769613
Alignment:
| Q |
28 |
ctgctcaggctatcatgggatctgatcaaattcagatacaagttccaaatgagaaagtgagaaactgataatatccgtctatttatgttttacatttatt |
127 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
1769782 |
ctgctcaggctatcgtgggatctgatcaaattcagatacaagttccaaatgagaaggtgataaactgataatatctgtctatttatgtttt-ccgttatt |
1769684 |
T |
|
| Q |
128 |
catgttttatg-taacatagctttgaatcacaaaatttatacaggtacgattaatcattgggaagggtggg |
197 |
Q |
| |
|
|| |||||||| |||| |||| || |||||||| |||||| ||||| | |||||||||||||| |||||| |
|
|
| T |
1769683 |
cacgttttatgttaacgtagccttaaatcacaacatttatgcaggtcgggttaatcattgggaaaggtggg |
1769613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University