View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5993_low_31 (Length: 307)

Name: NF5993_low_31
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5993_low_31
NF5993_low_31
[»] chr6 (5 HSPs)
chr6 (1-123)||(4261081-4261203)
chr6 (3-100)||(4267980-4268077)
chr6 (93-146)||(4300808-4300861)
chr6 (1-62)||(4300929-4300990)
chr6 (142-188)||(4267938-4267984)
[»] chr5 (7 HSPs)
chr5 (1-115)||(24102227-24102341)
chr5 (94-188)||(24106528-24106622)
chr5 (97-146)||(24106747-24106796)
chr5 (92-175)||(24047454-24047537)
chr5 (1-39)||(24106456-24106494)
chr5 (139-188)||(24044766-24044815)
chr5 (139-188)||(24052948-24052997)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4261203 - 4261081
Alignment:
Q  1 gaaatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgtactatgcacataaagttagatgttgattgattggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4261203 gaaatgttgattgattaggaatatagtattttcctaacttcgcaaacgaaatatggattcgtactatgcacttaaagttagatgttgattgattggaaat 4261104  T
Q  101 tttaaagtaatgtttggatattt 123  Q
    ||||||||||||||| |||||||    
T  4261103 tttaaagtaatgtttagatattt 4261081  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 4268077 - 4267980
Alignment:
Q  3 aatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgtactatgcacataaagttagatgttgattgattggaaat 100  Q
    |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  4268077 aatgttgattgattagaaatataatattttcctaacttcgcaaacgaaatatggattcgtactatgcacttaaatttagatgttgattgattggaaat 4267980  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 4300861 - 4300808
Alignment:
Q  93 ttggaaattttaaagtaatgtttggatattttaggctataaggatatttgaaat 146  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  4300861 ttggaaattttaaagtaatgtttagatattttaggctgtaaggatatttgaaat 4300808  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4300990 - 4300929
Alignment:
Q  1 gaaatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgt 62  Q
    ||||||||||||||||||||||||| || ||||||| ||| ||||| |||||||||||||||    
T  4300990 gaaatgttgattgattaggaatatattagtttcctatcttcgcaaatgaaatatggattcgt 4300929  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 4267984 - 4267938
Alignment:
Q  142 gaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 188  Q
    ||||||||||||| |  ||||||||||||||||||||||| ||||||    
T  4267984 gaaatggtcatcagacagaaatttaaagtaatgttagaaaatttgaa 4267938  T

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Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 24102227 - 24102341
Alignment:
Q  1 gaaatgttgattgattaggaatatagtattttcctaactttgcaaacgaaatatggattcgtactatgcacataaagttagatgttgattgattggaaat 100  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24102227 gaaatgttgattgattacgaatataatattttcctaacttcgcaaacgaaatatggattcgtactatgcacttaaaattagatgttgattgattggaaat 24102326  T
Q  101 tttaaagtaatgttt 115  Q
    ||||| |||||||||    
T  24102327 tttaatgtaatgttt 24102341  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 24106528 - 24106622
Alignment:
Q  94 tggaaattttaaagtaatgtttggatattttaggctataaggatatttgaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 188  Q
    |||||||||||||||||||||  |||||||||| |  ||||||||||||||| ||| |||| || ||||| |||||||||||| |||| ||||||    
T  24106528 tggaaattttaaagtaatgttaagatattttagaccgtaaggatatttgaaagggttatcagatagaaatgtaaagtaatgttcgaaaatttgaa 24106622  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 24106747 - 24106796
Alignment:
Q  97 aaattttaaagtaatgtttggatattttaggctataaggatatttgaaat 146  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||    
T  24106747 aaattttaaagtaatgtttagatattttaggctgcaaggatatttgaaat 24106796  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 24047454 - 24047537
Alignment:
Q  92 attggaaattttaaagtaatgtttggatattttaggctataaggatatttgaaatggtcatcaaatggaaatttaaagtaatgt 175  Q
    |||||||| |||||||| |||||| || |||  | ||| ||||||||| |||||||||||||| || ||||||  |||||||||    
T  24047454 attggaaaatttaaagtgatgtttagaaattgaaagctgtaaggatatatgaaatggtcatcagatagaaattcgaagtaatgt 24047537  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24106456 - 24106494
Alignment:
Q  1 gaaatgttgattgattaggaatatagtattttcctaact 39  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  24106456 gaaatgttgattgattaggaatataatattttcttaact 24106494  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 24044766 - 24044815
Alignment:
Q  139 tttgaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 188  Q
    |||||||||||||||| |  ||||||||||||||| ||||||| ||||||    
T  24044766 tttgaaatggtcatcagaaagaaatttaaagtaattttagaaaatttgaa 24044815  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 24052948 - 24052997
Alignment:
Q  139 tttgaaatggtcatcaaatggaaatttaaagtaatgttagaaattttgaa 188  Q
    |||||||||||||||| |  |||||||||||||| |||||||| ||||||    
T  24052948 tttgaaatggtcatcagaaagaaatttaaagtaaagttagaaaatttgaa 24052997  T

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