View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_33 (Length: 296)
Name: NF5993_low_33
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 80 - 285
Target Start/End: Original strand, 13453735 - 13453940
Alignment:
| Q |
80 |
atttttatagtgaattaaatgaactattgtaccttcatctgattccgatcacgacttattagaaatgagtcggcttttcagttttctattgcttcctttt |
179 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||||| |
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| T |
13453735 |
atttttatagtgaattaaatgatttattgtaccttcatctgctttggatcacggcttattagaaatgagtccgctcgtaagtgttctaatgcttcctttt |
13453834 |
T |
|
| Q |
180 |
cctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13453835 |
cctttttaggtgatgtactaattacggtcacattagcaccgaaagctttggcgaatttcacggccatatggccaagtccaccaagaccaacaacacctat |
13453934 |
T |
|
| Q |
280 |
attcat |
285 |
Q |
| |
|
|||||| |
|
|
| T |
13453935 |
attcat |
13453940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 128 - 281
Target Start/End: Original strand, 13412934 - 13413087
Alignment:
| Q |
128 |
tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt |
227 |
Q |
| |
|
|||| |||||| |||||||| || ||| | ||| |||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||| ||| |
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| T |
13412934 |
tcactacttatcagaaatgaatcagctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctt |
13413033 |
T |
|
| Q |
228 |
tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13413034 |
tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat |
13413087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 13419314 - 13419436
Alignment:
| Q |
163 |
ttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtccacca |
262 |
Q |
| |
|
|||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
13419314 |
ttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagccatatggccaagtccacca |
13419413 |
T |
|
| Q |
263 |
agaccaacaacacctatattcat |
285 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
13419414 |
agaccaacaacacctatattcat |
13419436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 285
Target Start/End: Original strand, 13446836 - 13446987
Alignment:
| Q |
134 |
cttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaa |
233 |
Q |
| |
|
|||| |||||| ||||| ||| | ||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||| |||| |||| |
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|
| T |
13446836 |
cttactagaaacgagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacggtcactttagcaccaaaagctttagcaa |
13446935 |
T |
|
| Q |
234 |
atttcacagccatatggccaagtccaccaagaccaacaacacctatattcat |
285 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
13446936 |
atttcacagccatatgaccaagtccaccaagaccaacaactcctatattcat |
13446987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 13385647 - 13385499
Alignment:
| Q |
128 |
tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt |
227 |
Q |
| |
|
||||||||||| |||||||| || ||| | ||| |||| ||||||||||||| || ||| ||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
13385647 |
tcacgacttatcagaaatgaatcagctcctaagtgttcttttgcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctt |
13385548 |
T |
|
| Q |
228 |
tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacc |
276 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
13385547 |
tggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacc |
13385499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 13426205 - 13426327
Alignment:
| Q |
163 |
ttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtccacca |
262 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
13426205 |
ttctatcgcttccttttctttgctaggcgatgtactaattactgttacattagcaccaaaagctttggcgaatttcacagccatatgaccaagtccacca |
13426304 |
T |
|
| Q |
263 |
agaccaacaacacctatattcat |
285 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
13426305 |
agaccaacaacgcctatattcat |
13426327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 13389468 - 13389316
Alignment:
| Q |
128 |
tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt |
227 |
Q |
| |
|
||||||||||| |||||||| |||||| | ||| |||||||||||| || || || || |||||||||||||| || || ||| | ||||| || ||| |
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|
| T |
13389468 |
tcacgacttatcagaaatgaatcggctcctaagtgttctattgcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctt |
13389369 |
T |
|
| Q |
228 |
tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctata |
280 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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|
| T |
13389368 |
tggcaaatttcacagccatgtgaccaagcccaccaagaccaacaacacctata |
13389316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 13393843 - 13393718
Alignment:
| Q |
160 |
gttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctttggcaaatttcacagccatatggccaagtcca |
259 |
Q |
| |
|
||||||||||||||| || || || || ||||||||||||||||| || |||||||| || ||| |||| ||||| |||||| ||| || ||||||||| |
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|
| T |
13393843 |
gttttctattgcttctttctctttgttgggtgatgtactaattactgttacattagctccaaaagcttttgcaaacttcacacccaagtgaccaagtcca |
13393744 |
T |
|
| Q |
260 |
ccaagaccaacaacacctatattcat |
285 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
13393743 |
ccaagaccaacaatacctatattcat |
13393718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 13373102 - 13373169
Alignment:
| Q |
209 |
acattagcaccgaaacctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacc |
276 |
Q |
| |
|
||||||||||| ||| |||||| |||||||||||||||||| || | ||||||||||||||| ||||| |
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|
| T |
13373102 |
acattagcaccaaaagctttggtaaatttcacagccatatgacctaatccaccaagaccaaccacacc |
13373169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 13378914 - 13378970
Alignment:
| Q |
225 |
ctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat |
281 |
Q |
| |
|
||||||| || |||||||||||||| || | ||||||||||||||| |||||||||| |
|
|
| T |
13378914 |
ctttggcgaacttcacagccatatgacctaatccaccaagaccaaccacacctatat |
13378970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 13453703 - 13453739
Alignment:
| Q |
23 |
aacaatcaatttaatttagtgatcgatttgacatttt |
59 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13453703 |
aacaatcattttaatttagtgatcgatttgacatttt |
13453739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 281
Target Start/End: Original strand, 47601101 - 47601254
Alignment:
| Q |
128 |
tcacgacttattagaaatgagtcggcttttcagttttctattgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaacctt |
227 |
Q |
| |
|
||||||||||| | ||||||||| ||| | || |||| ||||||| ||||| || |||||||||||||||||||| ||||||||||| || ||| ||| |
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|
| T |
47601101 |
tcacgacttatcaaaaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagccccaaaagctt |
47601200 |
T |
|
| Q |
228 |
tggcaaatttcacagccatatggccaagtccaccaagaccaacaacacctatat |
281 |
Q |
| |
|
| ||||| || |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
47601201 |
tagcaaacttaacagccatgtgaccaagtccaccaagaccaacaacacctatat |
47601254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 28430767 - 28430701
Alignment:
| Q |
212 |
ttagcaccgaaacctttggcaaatttcacagccatatggccaagtccaccaagaccaacaacaccta |
278 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
28430767 |
ttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacaccta |
28430701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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