View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5993_low_34 (Length: 289)
Name: NF5993_low_34
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 12279023 - 12279152
Alignment:
| Q |
1 |
attcttcaacatttctgctagggcacattctatgatacttgatgatgtatcggttcctgcagtaaatagattctatacag--gagtaaaatgttattatt |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
12279023 |
attcttcaacatttctgctagggcccattctatgatacttgatgatgtatcggttcctgcagtaaatagattctatacagaagagtaaaatgttagtatt |
12279122 |
T |
|
| Q |
99 |
ggttagaattagaacaaaatctaattacat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12279123 |
ggttagaattagaacaaaatctaattacat |
12279152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 12279235 - 12279302
Alignment:
| Q |
212 |
caattatttatacctattaagcttgttaactaaaaattttgatcctctaaaaaactagtaactttctta |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12279235 |
caattatttatacctattaagcttgttaactaaaaattttgatcctctaaaaaa-tagtaactttctta |
12279302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University