View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_35 (Length: 286)
Name: NF5993_low_35
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 20890435 - 20890698
Alignment:
| Q |
16 |
taatgtacaattcttgctaattagagttcattgttttttaattaaattttcaacctttcatgacaaaaaaggaaatttttgtnnnnnnnnn---gttgga |
112 |
Q |
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| T |
20890435 |
taatgtacaattcttgctaattagagttcattgttttttaattaaattttcaacctttcatgacaaaaaaggaaatttttgtaaaaaaaaaaaagttgga |
20890534 |
T |
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| Q |
113 |
acttggcaaagtcaacgctacaaataaagcacaatagacatgatacacaacttaaacgtaatgtagaaatttttatgtgaaacaatttgatcatagaaaa |
212 |
Q |
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| T |
20890535 |
acttggcaaagtcaacgctacaaataaagcacaatagacatgatacagaacttaaacgtaatgtagaaatttttatgtgaaacaatttgatcatagaaaa |
20890634 |
T |
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| Q |
213 |
ttagtatacatgtgtagttatatgatatcttcaatatctcattaacataatttctttcattcat |
276 |
Q |
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| T |
20890635 |
ttagtatacatgtgtagttatatgatatcttcaatatctcattaacataatttctttcattcat |
20890698 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 37869657 - 37869615
Alignment:
| Q |
186 |
tatgtgaaacaatttgatcatagaaaattagtatacatgtgta |
228 |
Q |
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| T |
37869657 |
tatgtgaaacaatttgatcatagaaaatgagtattcctgtgta |
37869615 |
T |
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