View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_4 (Length: 642)
Name: NF5993_low_4
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 107 - 626
Target Start/End: Original strand, 34352896 - 34353420
Alignment:
| Q |
107 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
206 |
Q |
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| T |
34352896 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
34352995 |
T |
|
| Q |
207 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34352996 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
34353095 |
T |
|
| Q |
307 |
acaaaataagcaaa-----acaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgac |
401 |
Q |
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| T |
34353096 |
acaaaataagcaaaacaaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgac |
34353195 |
T |
|
| Q |
402 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaa |
501 |
Q |
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| T |
34353196 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaaagcacaagacaaagacttcactaaggaggaagaa |
34353295 |
T |
|
| Q |
502 |
accattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgt |
601 |
Q |
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| T |
34353296 |
accattgtcgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgt |
34353395 |
T |
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| Q |
602 |
ttattttaatattacaccatgattg |
626 |
Q |
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| T |
34353396 |
ttattttaatattacaccatgattg |
34353420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 119 - 626
Target Start/End: Original strand, 34358547 - 34359045
Alignment:
| Q |
119 |
cacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaa |
218 |
Q |
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| T |
34358547 |
cacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaa |
34358646 |
T |
|
| Q |
219 |
accattggcgtttttcctatgagctgtaccatgtcaacag---aaaaaatggatattcatcgctgaattgcttggatattctcaagcacagacaaaataa |
315 |
Q |
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| T |
34358647 |
accattggcgtttttcctatgagttgtgccatgcaagcagcaaaaaaaatggagattcatcaccgaattgcatg------ct---------acaaaataa |
34358731 |
T |
|
| Q |
316 |
gcaaaa-caaaacaaaaatagtgt--gaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatgg |
412 |
Q |
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| T |
34358732 |
gaaaaaacaaaacaaaaatagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtgg |
34358831 |
T |
|
| Q |
413 |
aagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaaaccattgttgc |
512 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
34358832 |
aagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaagccattgttgt |
34358931 |
T |
|
| Q |
513 |
ttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaata |
612 |
Q |
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| T |
34358932 |
ttgttgagaattctcagatcacataacattgttaaaagaagataaggtacacgcacgaaatgcacaagatcatggttgattgtgtttgtttattttaata |
34359031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
129 |
tacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
228 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||| | ||| || ||||| ||||||||||| | |
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| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
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| Q |
229 |
tttttcctatgagctg |
244 |
Q |
| |
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|||||||||||||||| |
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| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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