View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_42 (Length: 256)
Name: NF5993_low_42
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 52511181 - 52511425
Alignment:
| Q |
1 |
acaaataatgttacaaacatgacacttaatatttaaannnnnnnaatatatccccttatnnnnnnnntgaattttggatatataataatttagattaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
52511181 |
acaaataatgttacaaacatgacacttaatatttaaaattttgga-tatatcccctta--aaaaaaatgaattttggatatataataattcagattaatt |
52511277 |
T |
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| Q |
101 |
gcacgatattatatcagatattgtttcttcttaaaataccttaaagggtgggcatgaagggcgtgattctgatgaagatcgtgatttcttcaacgccgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52511278 |
gcacgatattatatcagatattgtttcttcttaaaataccttaaagggtgggcatgaaggacgtgattctgatgaagatcgtgatttcttcaacgccgtt |
52511377 |
T |
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| Q |
201 |
tgagattgagaaacctttgactccatcaaggtgcaccctctctctgtt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52511378 |
tgagattgagaaacctttgactccatcaaggtgcaccctctctttgtt |
52511425 |
T |
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