View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5993_low_52 (Length: 237)

Name: NF5993_low_52
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5993_low_52
NF5993_low_52
[»] chr6 (2 HSPs)
chr6 (16-237)||(29046648-29046868)
chr6 (90-235)||(2441930-2442074)
[»] chr7 (4 HSPs)
chr7 (73-235)||(25828909-25829071)
chr7 (74-231)||(12501429-12501586)
chr7 (74-231)||(12527062-12527220)
chr7 (158-235)||(5465071-5465148)
[»] chr1 (3 HSPs)
chr1 (73-229)||(2887007-2887163)
chr1 (89-235)||(16824622-16824768)
chr1 (35-70)||(16824809-16824844)
[»] chr4 (5 HSPs)
chr4 (74-235)||(47924784-47924946)
chr4 (102-230)||(41941055-41941183)
chr4 (105-180)||(10819891-10819966)
chr4 (154-235)||(54258905-54258986)
chr4 (24-68)||(41941236-41941280)
[»] chr3 (3 HSPs)
chr3 (89-235)||(43444931-43445077)
chr3 (73-230)||(53590570-53590727)
chr3 (144-235)||(7321053-7321144)
[»] chr2 (4 HSPs)
chr2 (75-235)||(4653132-4653295)
chr2 (73-235)||(5964612-5964775)
chr2 (20-70)||(4653055-4653105)
chr2 (20-70)||(6571784-6571834)
[»] chr8 (7 HSPs)
chr8 (73-231)||(1759122-1759279)
chr8 (74-221)||(23589402-23589544)
chr8 (73-235)||(12562732-12562896)
chr8 (73-210)||(12561722-12561861)
chr8 (105-230)||(15242965-15243090)
chr8 (20-70)||(12561647-12561697)
chr8 (20-66)||(23589326-23589372)
[»] chr5 (1 HSPs)
chr5 (73-218)||(12292469-12292613)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 29046648 - 29046868
Alignment:
Q  16 ttatcttctccaaactgcacccgttgctcttcatccattgaggatattcttcactttgagagctttggctctgcttgaatatgagacgctataataattt 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  29046648 ttatcttctccaaactgcacctgttgctcttcatccattgaggat-ttcttcactttgagagctttggctctgcttgaatatgaggtgctataataattt 29046746  T
Q  116 tgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgtttattacagaagtatggtatgcttagtgttggaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29046747 tgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgtttattacagaagtatggtatgcttagtgttggaga 29046846  T
Q  216 aacaatattatttttgaggaac 237  Q
    ||||||||||||||||||||||    
T  29046847 aacaatattatttttgaggaac 29046868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 2441930 - 2442074
Alignment:
Q  90 ttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgtttattacag 189  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||| || |||||| ||||| |||||| |||| ||| ||| |||||||||||||||||||    
T  2441930 ttgaatatgggacgctataataatttt-tctctgaatttgatgttaaagtttggtttcataagatgataaagagtatttctgctattttgtttattacag 2442028  T
Q  190 aagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
     ||||| |||||||| |||||| |||||||||| ||||||| ||||    
T  2442029 gagtatcgtatgcttggtgttgaagaaacaatactatttttaagga 2442074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 25829071 - 25828909
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    ||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25829071 gagagttttggctctgcttgaatatgaggcgttataataattttttctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttcctc 25828972  T
Q  173 tattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    ||| |||||| |||||| ||||||||||| || ||||||||||||||||| ||||||| ||||    
T  25828971 tatgttgtttgttacaggagtatggtatggttggtgttggagaaacaatactattttttagga 25828909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 12501429 - 12501586
Alignment:
Q  74 agagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgct 173  Q
    ||||||||| ||| ||||||||||| | || |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  12501429 agagctttgactccgcttgaatatggggcgttataataattttttctctgaatttgatgtcaaggtttggcttcatcagatgacaaagggtacttcctct 12501528  T
Q  174 attttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttg 231  Q
    ||||| ||| ||| || |||||||||||||| |||||||||||||||| |||||||||    
T  12501529 attttctttgttataggagtatggtatgcttggtgttggagaaacaatgttatttttg 12501586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 12527062 - 12527220
Alignment:
Q  74 agagctttggctctgcttgaatatgaga-cgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    ||||||||| ||| ||||||||||| |  || |||||||||||| ||| | |||||||||||||||||||||||||| | ||||||||||||||||||      
T  12527062 agagctttgactccgcttgaatatgggggcgttataataattttttctctaaatttgatgtcaaggtttggcttcatcaaatgacaaagggtacttcctt 12527161  T
Q  173 tattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttg 231  Q
    |||||| ||| || ||  |||||||||||||| |||||||||||||||| |||||||||    
T  12527162 tattttctttgttgcacgagtatggtatgcttggtgttggagaaacaatgttatttttg 12527220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 5465148 - 5465071
Alignment:
Q  158 aaagggtacttccgctattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    |||||||||| || |||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  5465148 aaagggtactacctctattttgtttattacaggagtatgatatgcttggtgttggagaaacaatactattttttagga 5465071  T

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Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 2887007 - 2887163
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    |||||||||| ||| |||| |||||| | || |||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |    
T  2887007 gagagctttgactccgcttaaatatggggcgttataataattttttctatgaatttgatgtcaaggttcgacttcatgagatgacaaagggtacttcctc 2887106  T
Q  173 tattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttt 229  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||    
T  2887107 tattttgtttgttacaggagtatggtatgcttggtgttggagaaacaatactatttt 2887163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 16824768 - 16824622
Alignment:
Q  89 cttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgtttattaca 188  Q
    |||||||||| | || |||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  16824768 cttgaatatggggcgttataataaatttttctatgaatttgatgtcaaggtttgacttcatgagatgacaaagggtacttcctctattttgtttgttaca 16824669  T
Q  189 gaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
      |||||| ||||| | ||||| ||||||||||| | ||||||||||    
T  16824668 tgagtatgatatgcctggtgttcgagaaacaatactttttttgagga 16824622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 16824844 - 16824809
Alignment:
Q  35 cccgttgctcttcatccattgaggatattcttcact 70  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16824844 cccgttgctcttcatccatagaggatattcttcact 16824809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 47924946 - 47924784
Alignment:
Q  74 agagctttggctctgcttgaatatgagacgctataataattttgt-ctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    ||||||||| ||| ||||||||||| | || ||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  47924946 agagctttgactccgcttgaatatggggcgttataatattttttttctctgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttcctc 47924847  T
Q  173 tattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    ||||||||||  ||||| |||||||||||||| ||||||||||||||| | ||||||| ||||    
T  47924846 tattttgtttgctacaggagtatggtatgcttggtgttggagaaacaacactattttttagga 47924784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 41941183 - 41941055
Alignment:
Q  102 cgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgtttattacagaagtatggtatg 201  Q
    ||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||  ||||||||||     
T  41941183 cgctataataattatttctctgactttgatgtcaaggtttggcttcatgagatgacaaagggtacttctgctatttttcttatcacaagagtatggtata 41941084  T
Q  202 cttagtgttggagaaacaatattattttt 230  Q
    ||| ||||||||||||||||| |||||||    
T  41941083 cttggtgttggagaaacaatactattttt 41941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 10819891 - 10819966
Alignment:
Q  105 tataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgt 180  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  10819891 tataataattttttctctgaatttgatgtcaaggtttgacttcatgagatgacaaagggtacttcctctattttgt 10819966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 54258905 - 54258986
Alignment:
Q  154 tgacaaagggtacttccgctattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    ||||||||||||||||| |   ||||||| |||||| |||||||||||| | ||||||||||||||||| ||||||||||||    
T  54258905 tgacaaagggtacttccccagctttgtttgttacaggagtatggtatgcctggtgttggagaaacaatactatttttgagga 54258986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 41941280 - 41941236
Alignment:
Q  24 tccaaactgcacccgttgctcttcatccattgaggatattcttca 68  Q
    ||||| |||||| ||||||||| ||||||| ||||||||||||||    
T  41941280 tccaagctgcactcgttgctctccatccatagaggatattcttca 41941236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 43444931 - 43445077
Alignment:
Q  89 cttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgtttattaca 188  Q
    |||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||| ||| |    
T  43444931 cttgaatatgaggcgttatagtaattttttctctgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttcctttactttgtttgttata 43445030  T
Q  189 gaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    | | |||||||||||| ||||||||||||||||| ||||||| ||||    
T  43445031 ggattatggtatgcttggtgttggagaaacaatactattttttagga 43445077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 53590727 - 53590570
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    |||||||||||||| |||||||| || |    ||| ||| |||| ||| |||||| |||||||| |||| ||||||||||||||||||| |||||||| |    
T  53590727 gagagctttggctccgcttgaatttggggtaatatcatatttttttctctgaattcgatgtcaaagttttgcttcatgagatgacaaagagtacttcctc 53590628  T
Q  173 tattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattattttt 230  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||  |||||||    
T  53590627 tattttgtttattacaggagtatggtatgcttggtgttggagaaacaatgctattttt 53590570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 7321053 - 7321144
Alignment:
Q  144 cttcatgagatgacaaagggtacttccgctattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||| ||||||||||||||||| || |||| ||||    
T  7321053 cttcatgagatgacaaagggtacttcctctattctgttcattacaggagtatggtatgcttggtgttggagaaacaatactaatttttagga 7321144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 4653132 - 4653295
Alignment:
Q  75 gagctttggctctgcttgaatatgagacgctataataattttgt-ctttgaattt--gatgtcaaggtttggcttcatgagatgacaaagggtacttccg 171  Q
    |||||||||||| ||||||||||| | || |||||||||||| | || ||| |||  |||||||| |||||||||||||||||||||||||||||||||     
T  4653132 gagctttggctccgcttgaatatggggcgttataataatttttttctctgagtttttgatgtcaaagtttggcttcatgagatgacaaagggtacttcct 4653231  T
Q  172 ctattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    ||||||||||| || ||| |||||||||||||  ||||||||||||||||| ||||||||||||    
T  4653232 ctattttgtttgttgcaggagtatggtatgctcggtgttggagaaacaatactatttttgagga 4653295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 5964775 - 5964612
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtc-tttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccg 171  Q
    ||||| |||||||| ||||||||||||  || || |||| |||| || |||||||| ||||||||| |||| ||| | |||||||||||||||  ||||     
T  5964775 gagagttttggctccgcttgaatatgaagcgttaaaatatttttttcctttgaattcgatgtcaagatttgactttacgagatgacaaagggtggttcct 5964676  T
Q  172 ctattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    ||||||||||| |||||| |||||| ||||||  ||||||||||||| ||| ||||||| ||||    
T  5964675 ctattttgtttgttacaggagtatgatatgctcggtgttggagaaacgatactattttttagga 5964612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 4653055 - 4653105
Alignment:
Q  20 cttctccaaactgcacccgttgctcttcatccattgaggatattcttcact 70  Q
    ||||||||| ||||||| ||||||||||| |||| ||||||||||||||||    
T  4653055 cttctccaagctgcacctgttgctcttcagccatagaggatattcttcact 4653105  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 6571834 - 6571784
Alignment:
Q  20 cttctccaaactgcacccgttgctcttcatccattgaggatattcttcact 70  Q
    ||||||||||||||| |||||||||||||  ||| || |||||||||||||    
T  6571834 cttctccaaactgcaaccgttgctcttcactcatagacgatattcttcact 6571784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 1759279 - 1759122
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    |||||||||| ||| ||||||||||  | |  |||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||  |||| |    
T  1759279 gagagctttgactccgcttgaatattgggcattataataatttt-tctctgaattcgatgtcaaggtttggcttcatgagatgacaaaaggttattcctc 1759181  T
Q  173 tattttgtttattacagaagtatggtatgcttagtgttggagaaacaatattatttttg 231  Q
    |||||||| | |||||  ||||| |||||||| ||||||||||||||||| ||||||||    
T  1759180 tattttgtatgttacatgagtatagtatgcttggtgttggagaaacaatactatttttg 1759122  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 23589402 - 23589544
Alignment:
Q  74 agagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgct 173  Q
    ||||||||||||| ||||||||||| |||   ||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||| ||    
T  23589402 agagctttggctccgcttgaatatgggac---ataataacttt-tctctgaatt-gatgtcaaggtttggcttcatgagatgacaaagggcacttcctct 23589496  T
Q  174 attttgtttattacagaagtatggtatgcttagtgttggagaaacaat 221  Q
    |||||| || |||||| | |||||||||||| | ||||||||||||||    
T  23589497 attttgcttgttacaggattatggtatgcttggggttggagaaacaat 23589544  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 235
Target Start/End: Original strand, 12562732 - 12562896
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    |||||||||| ||| ||||||||||| |||| |||||||||||| ||| | |||||||| |||||||||||||||||||||| ||||| ||||||||| |    
T  12562732 gagagctttgactccgcttgaatatgggacgttataataatttt-tctctaaatttgatatcaaggtttggcttcatgagataacaaatggtacttcctc 12562830  T
Q  173 tattttgt---ttattacagaagtatggtatgcttagtgttggagaaacaatattatttttgagga 235  Q
    ||||||||   || ||| |  |||||||||||||| |||||    |||||||||||||||| ||||    
T  12562831 tattttgtttgttgttataagagtatggtatgcttggtgttaagaaaacaatattattttttagga 12562896  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 12561722 - 12561861
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    |||||||||||||| ||||||||||| || | |||||||||||| ||| | |||||||| |||||||||||||||||||||| ||||| ||||||||| |    
T  12561722 gagagctttggctccgcttgaatatgggaggttataataatttt-tctctaaatttgatatcaaggtttggcttcatgagataacaaatggtacttcctc 12561820  T
Q  173 tattttgt---ttattacagaagtatggtatgcttagtgtt 210  Q
    ||||||||   || |||||  |||||||||||||| |||||    
T  12561821 tattttgtttgttgttacaagagtatggtatgcttggtgtt 12561861  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 15242965 - 15243090
Alignment:
Q  105 tataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgctattttgtttattacagaagtatggtatgctt 204  Q
    |||||||||||  ||| | ||||||| ||||| |||||||||||||||||||||||||| | ||||  || ||||||| ||| || |||||||||| |||    
T  15242965 tataataatttattctctaaatttgaggtcaaagtttggcttcatgagatgacaaagggcatttcctatagtttgtttgttataggagtatggtatactt 15243064  T
Q  205 agtgttggagaaacaatattattttt 230  Q
     ||||||||||||||||  |||||||    
T  15243065 ggtgttggagaaacaatgctattttt 15243090  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 12561647 - 12561697
Alignment:
Q  20 cttctccaaactgcacccgttgctcttcatccattgaggatattcttcact 70  Q
    ||||||||| |||||||| |||||||||| |||| ||||||||||||||||    
T  12561647 cttctccaagctgcacccattgctcttcacccatggaggatattcttcact 12561697  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 23589326 - 23589372
Alignment:
Q  20 cttctccaaactgcacccgttgctcttcatccattgaggatattctt 66  Q
    ||||||||| | ||||||||||||||||| |||| ||||||||||||    
T  23589326 cttctccaagccgcacccgttgctcttcacccatagaggatattctt 23589372  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 12292613 - 12292469
Alignment:
Q  73 gagagctttggctctgcttgaatatgagacgctataataattttgtctttgaatttgatgtcaaggtttggcttcatgagatgacaaagggtacttccgc 172  Q
    ||||| ||||| || ||||||||||||| || ||| |||||||| ||||| || | ||||||||  ||||| || ||||||  ||||||||||| ||| |    
T  12292613 gagagatttggttccgcttgaatatgaggcgttattataattttttctttaaaatcgatgtcaaaatttggttttatgagacaacaaagggtacctcctc 12292514  T
Q  173 tattttgtttattacagaagtatggtatgcttagtgttggagaaac 218  Q
    |||||||||| |||||| |||||| ||||| | |||||||||||||    
T  12292513 tattttgtttgttacaggagtatgatatgcct-gtgttggagaaac 12292469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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