View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_55 (Length: 236)
Name: NF5993_low_55
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_55 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 29822652 - 29822545
Alignment:
| Q |
112 |
tatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatctttctcttcatcttccaacttcatc |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
29822652 |
tatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttcctctttatcttccaacttcatc |
29822553 |
T |
|
| Q |
212 |
cccataac |
219 |
Q |
| |
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|||||||| |
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| T |
29822552 |
cccataac |
29822545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 9777068 - 9777181
Alignment:
| Q |
106 |
tcacaatatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatc-tttctcttcatcttccaa |
204 |
Q |
| |
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|||||| ||||||||||||||||||| |||| | |||||||| |||||| ||| |||||||||||| || ||||||||| | |||| | |||||||| |
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| T |
9777068 |
tcacaacatatgataatttatattatctttctctgtttgtcttaaatttcctaaaattaaaaatcaccaacaatcttcatcatctctccttttcttccaa |
9777167 |
T |
|
| Q |
205 |
cttcatccccataa |
218 |
Q |
| |
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|||||||||||||| |
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| T |
9777168 |
cttcatccccataa |
9777181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 9769412 - 9769345
Alignment:
| Q |
102 |
tgactcacaatatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaat |
169 |
Q |
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|||||||||| ||||||||||||||||||| |||| |||||| |||| |||||| ||| ||||||||| |
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| T |
9769412 |
tgactcacaacatatgataatttatattatctttctttatttatcttgaatttcttaaaattaaaaat |
9769345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 24546964 - 24546856
Alignment:
| Q |
111 |
atatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatctttctcttcatcttccaacttcat |
210 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
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| T |
24546964 |
atatatgataatttctattatatttccttatttttctttaatttcttaaaattaaaaatcacaaataatcttcaccttcctcttcatcttccaacttcat |
24546865 |
T |
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| Q |
211 |
ccccataac |
219 |
Q |
| |
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||||||||| |
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| T |
24546864 |
ccccataac |
24546856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 28931010 - 28930900
Alignment:
| Q |
112 |
tatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttca---tctttctcttcatcttccaacttc |
208 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||| ||||||||||| ||||||| |
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| T |
28931010 |
tatatgataatttatattatatttcattatttgtctttaatttcttaaaattaaaaatcacaaaaaatcttcatattcttcctcttcatctttcaacttc |
28930911 |
T |
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| Q |
209 |
atccccataac |
219 |
Q |
| |
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|| |||||||| |
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|
| T |
28930910 |
attcccataac |
28930900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 9754223 - 9754148
Alignment:
| Q |
106 |
tcacaatatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaatcacaaatgatct |
181 |
Q |
| |
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||||| |||||||||||||||||||| ||| |||||||||| |||||| ||| |||||||||||| ||| |||| |
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| T |
9754223 |
tcacagtatatgataatttatattatctttttttatttgtctcgaatttcctaaaattaaaaatcaccaataatct |
9754148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 242653 - 242771
Alignment:
| Q |
103 |
gactcacaatatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatcttt----ctcttcatc |
198 |
Q |
| |
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||||||||| ||||||| ||||||| || ||||| |||||||||| ||||| ||| |||||||||||| || |||||||||||| ||||||||| |
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| T |
242653 |
gactcacaacatatgatcatttata--atctttccctatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatctttttccctcttcatc |
242750 |
T |
|
| Q |
199 |
ttccaacttcatccccataac |
219 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
242751 |
tcccaacttcatccccataac |
242771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 6709878 - 6709996
Alignment:
| Q |
103 |
gactcacaatatatgataatttatattatatttccttatttgtctttaatttcataagattaaaaatcacaaatgatcttcatctt----tctcttcatc |
198 |
Q |
| |
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||||||||| ||||||| ||||||| || ||||| |||||||||| ||||| ||| |||||||||||| || ||||||||||| ||||||||| |
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| T |
6709878 |
gactcacaacatatgatcatttata--atctttccctatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatcttcttccctcttcatc |
6709975 |
T |
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| Q |
199 |
ttccaacttcatccccataac |
219 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
6709976 |
tcccaacttcatccccataac |
6709996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52970565 - 52970528
Alignment:
| Q |
1 |
tatatttccctagttcagtctcagaggaaaatgtatta |
38 |
Q |
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|||||||| || |||||||||||||||||||||||||| |
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| T |
52970565 |
tatatttcacttgttcagtctcagaggaaaatgtatta |
52970528 |
T |
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