View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_57 (Length: 228)
Name: NF5993_low_57
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_57 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2412208 - 2411981
Alignment:
| Q |
1 |
atttcatgaaaatgtgaaatgacataaatttcaaatcaatagggcttatagagtattataaagggtgttgtatcatgtattgcttgaattaatgtgcagg |
100 |
Q |
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| T |
2412208 |
atttcatgaaaatgtaaaatgacataaatttcaaatcaatagggcttatagagtattataaagggtgttgtatcatgtattgcttgaattaatgtgcagg |
2412109 |
T |
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| Q |
101 |
gggactcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcagttacaaagcat |
200 |
Q |
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| T |
2412108 |
gggactcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctactccaagtatatggcagctacaaagcat |
2412009 |
T |
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| Q |
201 |
acatttaactgtggtggcgtctttgtca |
228 |
Q |
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| T |
2412008 |
acatttaactgtggtggcgtctttgtca |
2411981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 14490 - 14366
Alignment:
| Q |
104 |
actcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcagttacaaagcataca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
14490 |
actcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcagctacaaagcacaca |
14391 |
T |
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| Q |
204 |
tttaactgtggtggcgtctttgtca |
228 |
Q |
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| T |
14390 |
tttaactgtggtggcgtctttgtca |
14366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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