View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5993_low_6 (Length: 559)
Name: NF5993_low_6
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 10 - 546
Target Start/End: Complemental strand, 49266531 - 49265995
Alignment:
| Q |
10 |
ataatactttatcatttgtgcagagagatcaaaattgctgagttcctcgagtcctaaggcagaattggagagtgtctcgggtcctaagacgcgtgatgag |
109 |
Q |
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| T |
49266531 |
ataatactttatcatttgtgcagagagatcaaaattgctgagttcctcgagtcctaaggcagaattggagagtgtctcgggtcctaagacgcgtgatgag |
49266432 |
T |
|
| Q |
110 |
gcagaagccaatccgcgtgcacgtacattcacattacaagagcttaaagccgcaaccaacaactttgcgccggaatgttttataggtgaagggggctttg |
209 |
Q |
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| T |
49266431 |
gcagaagccaatccgcgtgcacatacattcacattacaagagcttaaagccgcaaccaataactttgcgccggaatgttttataggtgaagggggctttg |
49266332 |
T |
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| Q |
210 |
ggcctgtatacaaaggttaccttgagagcgctaaaaacgtaagttgtgatagctgttgcaaagattttggtttttgcaaatgctagttcatccaagcata |
309 |
Q |
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| T |
49266331 |
ggcctgtatacaaaggttaccttgagagcgctaaaaacgtaagttgtgatagctgttgcaaagattttggtttttgcaaatgctagttcatccaagcata |
49266232 |
T |
|
| Q |
310 |
aactatatgtagtggtcaatttttcatttcattaacattgtacattttaaatatgtgtgaatgaaaaatgatgtttgtgcaacaggtagttgctgtgaaa |
409 |
Q |
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| T |
49266231 |
aactatatgtagtggtcaatttttcatttcattaacattgtacattttaaatatgtgtgaatgaaaaatgatgtttgtgcaacaggtagttgctgtgaaa |
49266132 |
T |
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| Q |
410 |
cagcttaacctaaaaggtggtcaaggagatcgagaatttttggtggaagttctaatgctaaacctcttaaatcacaaacatcttgtgaacttggttggtt |
509 |
Q |
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| T |
49266131 |
cagctaaacctaaaaggtggtcaaggagatcgagaatttttggtggaagttctaatgctaaacctcttaaagcacaaacatcttgtgaacttggttggtt |
49266032 |
T |
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| Q |
510 |
attgtgctgatggcaatcaacgattacttgtttatga |
546 |
Q |
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| T |
49266031 |
attgtgctgatggcaatcaacgactacttgtttatga |
49265995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 519
Target Start/End: Original strand, 6601699 - 6601826
Alignment:
| Q |
392 |
caggtagttgctgtgaaacagcttaacctaaaaggtggtcaaggagatcgagaatttttggtggaagttctaatgctaaacctcttaaatcacaaacatc |
491 |
Q |
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|||||||||||||| ||||||||| ||| || || ||||||| ||||||| ||||||||||||||||| ||||| | ||||||| ||||| | ||| |
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| T |
6601699 |
caggtagttgctgtaaaacagcttgaccggaatggacttcaaggaaatcgagagtttttggtggaagttctcatgctcagcctcttacatcacccaaatc |
6601798 |
T |
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| Q |
492 |
ttgtgaacttggttggttattgtgctga |
519 |
Q |
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||||||| ||| |||||||||| ||||| |
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| T |
6601799 |
ttgtgaatttgattggttattgcgctga |
6601826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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