View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5993_low_7 (Length: 518)
Name: NF5993_low_7
Description: NF5993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5993_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 300 - 511
Target Start/End: Complemental strand, 14073624 - 14073412
Alignment:
| Q |
300 |
tttttgtgtttgtgaccaaaa-gaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtgacatgtattttgttata |
398 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14073624 |
tttttgtgtttgtgatcaaaaagaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtcacatgtattttgttata |
14073525 |
T |
|
| Q |
399 |
ttaaaacnnnnnnnnggaagaaaattatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatcctta |
498 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073524 |
ttaaaacttttttatggaagaaaattatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatcctta |
14073425 |
T |
|
| Q |
499 |
ccatagaataatc |
511 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
14073424 |
ccatagaagaatc |
14073412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 300 - 511
Target Start/End: Complemental strand, 14081099 - 14080889
Alignment:
| Q |
300 |
tttttgtgtttgtgaccaaaa-gaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtgacatgtattttgttata |
398 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14081099 |
tttttgtgtttgtgatcaaaaagaggtgtccaaattgttgtgctaccacaagaattactctataaatagttttaaaaacggtcacatgtattttgttata |
14081000 |
T |
|
| Q |
399 |
ttaaaacnnnnnnnnggaagaaaattatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatcctta |
498 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14080999 |
ttaaaac-tttttatggaag-aaattatattaaaactttataaagtcaaaacattagtaacgaaatcttcattgttttttaaaaataaagagaatcctta |
14080902 |
T |
|
| Q |
499 |
ccatagaataatc |
511 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
14080901 |
ccatagaagaatc |
14080889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 14073869 - 14073750
Alignment:
| Q |
19 |
caactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaacatgccct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
14073869 |
caactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgactgtcacaggctcaaacatgctct |
14073770 |
T |
|
| Q |
119 |
tacgggtgaataaaatgaaa |
138 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14073769 |
tacgggtgaataaaatgaaa |
14073750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 14081345 - 14081226
Alignment:
| Q |
19 |
caactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaacatgccct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
14081345 |
caactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgactgtcacaggctcaaacatgctct |
14081246 |
T |
|
| Q |
119 |
tacgggtgaataaaatgaaa |
138 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14081245 |
tacgggtgaataaaatgaaa |
14081226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 14104812 - 14104723
Alignment:
| Q |
23 |
tgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14104812 |
tgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaaca |
14104723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 11837453 - 11837223
Alignment:
| Q |
30 |
tctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaacatgcccttacgggtgaat |
129 |
Q |
| |
|
|||||| | ||| ||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||| | ||| |
|
|
| T |
11837453 |
tctgatatagattttcatgaggctactttgaaaaacatggtttatggttttggttactttcttgattgtcacaggctcagacaagcccttagccttaaat |
11837354 |
T |
|
| Q |
130 |
aaaatgaaaaactgaac-ttgttataaatatgagtgtgaact--tggtgctgttctgctgtaacagaatttatttgtataacactgcataccttgttatg |
226 |
Q |
| |
|
|||||||||| | ||| ||||||||||| ||| |||||||| | | | |||||||| ||||||||||| | | ||||||| ||||| ||||||| |
|
|
| T |
11837353 |
aaaatgaaaatttaaacgttgttataaatttgattgtgaacttattataccgttctgctttaacagaattt-tgttagtaacactatataccctgttatg |
11837255 |
T |
|
| Q |
227 |
tgtggtcatgatatcaggc-aaaagaaataat |
257 |
Q |
| |
|
||||| |||| |||||| | |||||||||||| |
|
|
| T |
11837254 |
tgtggacatgctatcagtcaaaaagaaataat |
11837223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 14113051 - 14112985
Alignment:
| Q |
29 |
ctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgat |
95 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
14113051 |
ctctgatttggatcttcataaggctacattgaaaaacttggcttatggttttgcttaatttgttgat |
14112985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 14073744 - 14073695
Alignment:
| Q |
206 |
aacactgcataccttgttatgtgtggtcatgatatcaggcaaaagaaata |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14073744 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
14073695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 14081220 - 14081171
Alignment:
| Q |
206 |
aacactgcataccttgttatgtgtggtcatgatatcaggcaaaagaaata |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14081220 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
14081171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University