View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5994_high_10 (Length: 208)
Name: NF5994_high_10
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5994_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 2601130 - 2600948
Alignment:
| Q |
12 |
catcatcaccgacaacatcacaactacatccctcttctctatcagctactaacacattttgtctcaacagcagtatgttttaacaacactccaacttcac |
111 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601130 |
catcatcaccggcaacatcacaaccacatccctcttctctatcagctaccaacacattttctctcaacagcagtatgttttaacaacactccaacttcac |
2601031 |
T |
|
| Q |
112 |
cactcttatcattcatttcatcccaaacagtaaactcaaataacacatctcattccaaaatcttgattttgcagtgcataatg |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2601030 |
cactcttatcatccatttcatcccaaacaataaactcaaataacacatctcattccaaaatcttgattttgcagtgcataatg |
2600948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 5929338 - 5929512
Alignment:
| Q |
12 |
catcatcaccgacaacatcacaactacatccctcttctctatcagctactaacacattttgtctcaacagcagtatgttttaacaacactccaacttcac |
111 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5929338 |
catcatcaccagcaacatcacagccacatccctcttctctatcagctaccaacacattttctctcaacaacagtatgttctaacaacactccaacttcac |
5929437 |
T |
|
| Q |
112 |
cactcttatcattcatttcatcccaaacagtaaactcaaataacacatctcattccaaaatcttgattttgcagt |
186 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5929438 |
cactcttatcaaccatttcatcccaaacagtaaactctcataacacatctcattccaaaatcttgattttgcagt |
5929512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 42844032 - 42844206
Alignment:
| Q |
12 |
catcatcaccgacaacatcacaactacatccctcttctctatcagctactaacacattttgtctcaacagcagtatgttttaacaacactccaacttcac |
111 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
42844032 |
catcatcaccagcaacatcacaaccgcatccctcttctctatcagctaccaacacattttctctcaacagtagtatgttctaacaacactccaacttcac |
42844131 |
T |
|
| Q |
112 |
cactcttatcattcatttcatcccaaacagtaaactcaaataacacatctcattccaaaatcttgattttgcagt |
186 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42844132 |
cactcttatcaaccatttcatcccaaacagtaaactctcataacatatctcattccaaaatcttgattttgcagt |
42844206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 46098095 - 46098005
Alignment:
| Q |
104 |
aacttcaccactcttatcattcatttcatcccaaacagtaaactcaaataacacatctcattccaaaatcttgattttgcagtgcataatg |
194 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46098095 |
aacttcatcactcttatcaaccatttcatcccaaacagtaaactctcataacacatctcattccaaaatcttgattttgcagtgcataatg |
46098005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 9124298 - 9124124
Alignment:
| Q |
12 |
catcatcaccgacaacatcacaactacatccctcttctctatcagctactaacacattttgtctcaacagcagtatgttttaacaacactccaacttcac |
111 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||||| |||||||| || |||||| |||||||| ||||||||||| |
|
|
| T |
9124298 |
catcatcaccggcaacatcacaaccgcatccctcttctctattagctaccaacacattttctctcaacaacattatgttctaacaacagtccaacttcac |
9124199 |
T |
|
| Q |
112 |
cactcttatcattcatttcatcccaaacagtaaactcaaataacacatctcattccaaaatcttgattttgcagt |
186 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9124198 |
cactcttatcaaccatttcatcccaaacagtaaacgctcataacacatcccattccaaaatcttgattttgcagt |
9124124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University