View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5994_high_3 (Length: 511)
Name: NF5994_high_3
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5994_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 10337801 - 10337323
Alignment:
| Q |
18 |
atcctttagacgaaaaacatgtgcatttctttcggcctaaataacccaagcacatgagtgccaaatgaaataaaggaccaatcagatatattttagaaaa |
117 |
Q |
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| T |
10337801 |
atcctttagacgaaaaacatgtgcatttctttcggcctaaataacccaagcacatgagtgccaaatgaaataaaggactaatcggatattttttagaaaa |
10337702 |
T |
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| Q |
118 |
ccgtctaaagtcccaaattgaagtatcattcatcctccaaaattcaaagaaaaacaaagataacaatgaatataatatgttttttgttaaacccaaagca |
217 |
Q |
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| T |
10337701 |
tcgtctaaagtcccaaattgaagtat---tcatcctccaaaattcaaagaaaaacaaagataacaatgaatataatatgtttttt--taaacccaaagca |
10337607 |
T |
|
| Q |
218 |
attaaacaaactatatatcttaggttcatttaaaaaatcatatattaacttaataaataattgatattctttgatacatagtatatgatcaaacctctca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10337606 |
attaaacaaactatatatcttaggttcatttaaaaaatcatatattaacttaataaataattgatattctttcatacatagtatatgatcaaacctctca |
10337507 |
T |
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| Q |
318 |
tcactaagattgaacctctcatcacataacttgattgggtcaatgttggtagtnnnnnnntgagttaaagttacattctcttagaaaccaatacttttaa |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
10337506 |
tcactaagcttgaacctctcatcacataacttgatt-ggtccatgttggtagtaaaaaaatgagttaaagttgcattctcttagaaaccaatacttttaa |
10337408 |
T |
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| Q |
418 |
gccgccggccatgttcgccgtaagaagtggcacgaatataggcttcgtatcactaactattttaatcctaaatctcctaagaatt |
502 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10337407 |
gccgccggccatgtgcgccgtaagaagtggcacgaatataggcttcttatcactaactattttaatcctaaatctcctaagaatt |
10337323 |
T |
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