View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5994_high_7 (Length: 374)
Name: NF5994_high_7
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5994_high_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 47467978 - 47467605
Alignment:
| Q |
1 |
tcgacccgatttgtttctgatgacagtcactgttagcgcatatcatttataagtgtctaaatataagctatttctataataagagataattaaaagtcca |
100 |
Q |
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| T |
47467978 |
tcgacccgatttgtttctgatgacagtcactgttagcgcatatcatttataagtgtctaaatataagctatttctataataagagataattaaaagtcca |
47467879 |
T |
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| Q |
101 |
actgtttttatataaacaataagtacttttcgtaagctatcctagagtcctaaacagtctcatatatgtttataccagtaaataaatccgaatgaacaaa |
200 |
Q |
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| T |
47467878 |
actgtttttatataaacaataagtacttttcgtaagctatcctagagtcctaaacagtctcatatatgtttataccagtaaataaatccgaatgaacaaa |
47467779 |
T |
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| Q |
201 |
tccaaacaggtccttgttcattgttcaccaacatctcttttttcaccaggcaatccaaccaaggttacaaggggaaaactttgacaagaacaagatcttt |
300 |
Q |
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| T |
47467778 |
tccaaacaggtccttgttcattgttcaccaacatctcttttttcaccaggcaatccaaccaaggttacaaggggaaaactttgacaagaacaagatcttt |
47467679 |
T |
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| Q |
301 |
tatcatcggatggaaaagttggcacaagagaagcatgaatgtacatcttcacaacttgctcttgcatggattct |
374 |
Q |
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| T |
47467678 |
tatcatcggatggaaaagttggcacaagagaagcatgaatgtacatcttcacaacttgctcttgcatggattct |
47467605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 2223078 - 2223143
Alignment:
| Q |
48 |
tataagtgtctaaatataagctatttctataataagagataattaaaagtccaactgtttttatat |
113 |
Q |
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| T |
2223078 |
tataagtgtttatgtataagctatttctataacaaaagataaagaaaagtcaaattgtttttatat |
2223143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 20713600 - 20713678
Alignment:
| Q |
62 |
tataagctatttctataataagagataattaaaagtccaactgtttttatataaacaataagtacttttcgtaagctat |
140 |
Q |
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| T |
20713600 |
tataagttatttctataacaatcgataatataaagtacaactgtttttatataaacaataaatgattttcgaaagctat |
20713678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 5756812 - 5756735
Alignment:
| Q |
62 |
tataagctatttctataataagagataattaaaagtccaactgtttttatataaacaataagtacttttcgtaagcta |
139 |
Q |
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| T |
5756812 |
tataagctatttctataacaaaagatgatataaagttaaactgttttcatataaattataagttgttttcgtaagcta |
5756735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 33209357 - 33209285
Alignment:
| Q |
51 |
aagtgtctaaatataagctatttctataataagagataattaaaagtccaactgtttttatataaacaataag |
123 |
Q |
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| T |
33209357 |
aagtgtctataaataagctatttctataatgaaagataaaataaagtcgaactgttttcatataaactataag |
33209285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 35535001 - 35534932
Alignment:
| Q |
48 |
tataagtgtctaaatataagctatttctataataagagataattaaaagtccaactgtttttatataaac |
117 |
Q |
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| T |
35535001 |
tataagtgcttatatataagctatttctataataaaagttaaaataaagtcaaactgtttttgtataaac |
35534932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 34429816 - 34429754
Alignment:
| Q |
62 |
tataagctatttctataataagagataattaaaagtccaactgtttttatataaacaataagt |
124 |
Q |
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| T |
34429816 |
tataagttatttctataataagagataaaataaagtctaactgttttcttataaactataagt |
34429754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 14295454 - 14295531
Alignment:
| Q |
66 |
agctatttctataataagagataattaaaagtccaactgtttttatataaacaataagtacttttcgtaagctatcct |
143 |
Q |
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| T |
14295454 |
agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcct |
14295531 |
T |
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