View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5994_low_1 (Length: 561)
Name: NF5994_low_1
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5994_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 52581077 - 52580536
Alignment:
| Q |
20 |
ctatctaacaaaatccaaccaaaaaggtcattaatttcccattctatgaagtttttgcgcgtcccatttcaacttggttttggaggttttatgaggtccg |
119 |
Q |
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| T |
52581077 |
ctatctaacaaaatccaaccaaaaaggtcattaatttcccattctatgaggtttttgcgcgtcctatttcaacttgattttggaggttttatgcagtacg |
52580978 |
T |
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| Q |
120 |
aattt------tgggaaaagaaacggtnnnnnnnnnn---cttgcttaggccgaatgatttaacagtaggcccaatatgaaaggattttaaagcccatac |
210 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
52580977 |
aattcatagggtgggaaaagaaacggtaaaaaaaaaaaaacttgtttaggccgaatgatttaacagtaggcccaatgtgaaaggatttcaaagcccatac |
52580878 |
T |
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| Q |
211 |
attcttggatggctcgatcgcggtgtctggacagtagttcatcagttcgtgtgatatctctctctgatttaacagcaaaatcttcgctcgatcgatcgat |
310 |
Q |
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| T |
52580877 |
attcttggatggctcgatcgcggtgtctggacagtagttcatcagttcgtgtgatctctctctctgatttaacagcaaaatcttcgctcgatcgatcgat |
52580778 |
T |
|
| Q |
311 |
ctgggagtgtgactcagtgagagcagatacttgctcgctgaatcatttcacatgcaattagaacaactctacacaaaagaagaaagagcgaaaaccct-- |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580777 |
ctgggagtgtgactcagtgagagcagatacttgctcgctgaatcatttcacatgcaattagaacaactctacacaaaagaagaaagagcgaaaaccctaa |
52580678 |
T |
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| Q |
409 |
nnnnnnnngtaacagaatgcgaatttagaaattaatttgtaaagtcgtgattacaatggcgaagcattcagtagcattggcgaagaaaagatggccgtta |
508 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580677 |
aaaaaaaagtaacagaatgcgaatttagaaattaattggtaaagtcgtgattacaatggcgaagcattcagtagcattggcgaagaaaagatggccgtta |
52580578 |
T |
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| Q |
509 |
atgttactagctttcatatcaatttcaacagtgatgattctt |
550 |
Q |
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| T |
52580577 |
atgttactagctttcatatcaatttcaacagtgatgattctt |
52580536 |
T |
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