View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5994_low_2 (Length: 512)
Name: NF5994_low_2
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5994_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 8939621 - 8939329
Alignment:
| Q |
1 |
tgaggtaaaaatgacaatacttgcgtttgattaccgtattttgcagggttttaaactaactgcgataatgaagtgtaaatatcaaggtagacaagcttag |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939621 |
tgaggtaaaaatgacaatacttgcttttgattaccgtattttgcagggttttgaactaactgcgataatgaagtgtaaatatcaaggtagacaagcttag |
8939522 |
T |
|
| Q |
101 |
cttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtcttgctgcttggttttcaaaatctgaacatcctctttcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939521 |
cttctggaaatttattttcaaaggcatccattttagatactaatttggagttgaagagtcttgctgcttggttttcaaaatctgaacatcctctttcaat |
8939422 |
T |
|
| Q |
201 |
gcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagctcctaaaccatatagttcctg |
293 |
Q |
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| T |
8939421 |
gcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagctcctaaaccatatagttcctg |
8939329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 332 - 486
Target Start/End: Complemental strand, 8939290 - 8939136
Alignment:
| Q |
332 |
gttcgaaacttatgaaaactaataacactagacaaagaaaataatgttataactgttctggaccggccagaaggtcaatacaacgatgatacgtggacta |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8939290 |
gttcgaaacttatgaaaactaataacactagacaaagaaaataatgttataactgttctggactggccagaaggtcaatacaacgatgatacgtggacta |
8939191 |
T |
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| Q |
432 |
aacgtccactgactaaggcgcatcgcctgaaggaacacgccaacgtcagtgcacc |
486 |
Q |
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| T |
8939190 |
aacgtccactgactaaggcgcatcgcctgaaggaacacgccaacgtcagtgcacc |
8939136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 74 - 293
Target Start/End: Complemental strand, 8947081 - 8946862
Alignment:
| Q |
74 |
tgtaaatatcaaggtagacaagcttagcttctggaaatttattttcaaaggcatccatttgagatactaatttggagttgaagagtcttgctgcttggtt |
173 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |||| ||| |
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| T |
8947081 |
tgtaaatatcaaggtagacaagcttagcctctggaaatttattttcaaaggcatccatttgagatactagtttggagttgaagactattgcagcttcgtt |
8946982 |
T |
|
| Q |
174 |
ttcaaaatctgaacatcctctttcaatgcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagct |
273 |
Q |
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||| ||| ||||||| ||| | || |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||| |
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| T |
8946981 |
ttctaaacctgaacagtgtctatacattcctcctccaattgttctctgtgagggaacacaccctatatatggcatgccaattactccaattcttctagct |
8946882 |
T |
|
| Q |
274 |
cctaaaccatatagttcctg |
293 |
Q |
| |
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||||||||||| |||||||| |
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| T |
8946881 |
cctaaaccataaagttcctg |
8946862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 382 - 486
Target Start/End: Complemental strand, 13159688 - 13159583
Alignment:
| Q |
382 |
aactgttctggaccggccagaaggtcaatacaacgatgatacgtggactaaacgtccactgac-taaggcgcatcgcctgaaggaacacgccaacgtcag |
480 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||| | | |||||| | ||||||||||||||||||||| |||| |
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| T |
13159688 |
aactgttctggaccggccagaaggtcaatccaacgatgacacgtggactaaacatacaccgccttaaggctcgacgcctgaaggaacacgccaacatcag |
13159589 |
T |
|
| Q |
481 |
tgcacc |
486 |
Q |
| |
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|||||| |
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|
| T |
13159588 |
tgcacc |
13159583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 12004549 - 12004634
Alignment:
| Q |
390 |
tggaccggccagaaggtcaatacaacgatgatacgtggactaaacgtcca-ctgactaaggcgcatcgcctgaaggaacacgccaa |
474 |
Q |
| |
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|||| ||| |||||||||||| | || ||||||||||||||||| | || | ||||||| | | ||||||||||||||||||||| |
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| T |
12004549 |
tggatcggtcagaaggtcaattccactgtgatacgtggactaaacattcatcagactaagacacgtcgcctgaaggaacacgccaa |
12004634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 31796055 - 31796150
Alignment:
| Q |
198 |
aatgcctcctccaattgttctctgtgagggcacacaccctatatttggcataccaattactccaatccttctagctcctaaaccatatagttcctg |
293 |
Q |
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||||||||| |||| |||||| ||||||||||||||||||||| ||| | | ||| |||||||||||||||| |||||| | ||||||||||| |
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| T |
31796055 |
aatgcctccaccaagtgttctttgtgagggcacacaccctataactggtacatcaaatactccaatccttctacctcctagtctgtatagttcctg |
31796150 |
T |
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