View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5994_low_4 (Length: 448)
Name: NF5994_low_4
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5994_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 6089672 - 6089995
Alignment:
| Q |
18 |
agttattcatagcatccactctttctttaatttctagtaactcttctagccatatatcaacttcttgcttgcgcttttttccatgagactttaatcgttg |
117 |
Q |
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| T |
6089672 |
agttattcatagcatccactctttctttaatttctagtaactcttctagccatatatcaacttcttgcttgcgcttttttccatgagactttaatcgttg |
6089771 |
T |
|
| Q |
118 |
aagttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctc |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6089772 |
aagttgttttgtaatataattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccaaaaacacttctattacaaccgctc |
6089871 |
T |
|
| Q |
218 |
ctgttcacacctgttccattgtttttgtgatgttaaattatttaacagttaaaacaatacaacgtaaatttggtactctagattatcaggacccttttac |
317 |
Q |
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| T |
6089872 |
ctgttcacacctgttccattgtttttgtgatgttaaattatttaacagttgaaacaatacaacgtaaatttggtactctagattaccaggacccttttac |
6089971 |
T |
|
| Q |
318 |
ccaagaatcaaagggttaagagtt |
341 |
Q |
| |
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| T |
6089972 |
ccaagaataaaagggttaagagtt |
6089995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 65 - 252
Target Start/End: Original strand, 6106890 - 6107077
Alignment:
| Q |
65 |
agccatatatcaacttcttgcttgcgcttttttccatgagactttaatcgttgaagttgttttgtaatatcattttcctcacattctagatcaaaaacca |
164 |
Q |
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| T |
6106890 |
agccatacatcaacttctggtttgcgcttttttccccgagactccaaccattgaagttgttttgcaatatctttttcctcacattttaaatcaataacca |
6106989 |
T |
|
| Q |
165 |
attgttttaagtgattaacctca-tttccgaaaacacttctattacaaccgctcctgttcacacctgttccattgtttttgtgatgtta |
252 |
Q |
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| T |
6106990 |
attgttttaattgattaatctcactttcagaaaa-acttctgttaccaccgctaccgtgcacacctgatccattatgtttgtcatgtta |
6107077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 6181329 - 6181449
Alignment:
| Q |
119 |
agttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcc |
218 |
Q |
| |
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|||||||||| |||||| |||| |||||||| | ||||| ||||||||||||||| ||||||| |||| | | |||||||| | ||||||||||| | |
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| T |
6181329 |
agttgttttgcaatatcgtttttatcacattccaaatcaataaccaattgttttaattgattaatctcactctcataaacacttatgttacaaccgctac |
6181428 |
T |
|
| Q |
219 |
tgttcacacctgttccattgt |
239 |
Q |
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| T |
6181429 |
tgttcacacctgctccgttgt |
6181449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 6208898 - 6209030
Alignment:
| Q |
120 |
gttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcct |
219 |
Q |
| |
|
|||| |||| |||| |||||||||| ||||||| ||||| ||||| |||||||| |||| || |||| || | |||||||||| |||| | |||| | |
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| T |
6208898 |
gttgctttgcaataacattttcctcgcattctaaatcaagaaccatttgttttatttgatcaatctcacttttggaaacacttctgttaccatcgctacc |
6208997 |
T |
|
| Q |
220 |
gttcacacctgttccattgtttttgtgatgtta |
252 |
Q |
| |
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||||||||||| |||||||| ||||| |||||| |
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| T |
6208998 |
gttcacacctgctccattgtgtttgtcatgtta |
6209030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 6248150 - 6248283
Alignment:
| Q |
119 |
agttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcc |
218 |
Q |
| |
|
|||||||||| |||||| ||||| |||| ||| | ||||| ||||||||||||||| ||||||| |||| | | |||||||| | || |||||||| | |
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| T |
6248150 |
agttgttttgcaatatcgttttcatcacgttccaaatcaataaccaattgttttaattgattaatctcactctcataaacacttatgttgcaaccgctac |
6248249 |
T |
|
| Q |
219 |
tgttcacacctgttccattgtttttgtgatgtta |
252 |
Q |
| |
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|||||| ||||| || |||| ||||| |||||| |
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| T |
6248250 |
tgttcatacctgctcagttgtgtttgtcatgtta |
6248283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 6095150 - 6095215
Alignment:
| Q |
114 |
gttgaagttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaagtgat |
179 |
Q |
| |
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|||| ||||||| ||||| ||||| ||||||||||||||||| || ||| | |||||||||||||| |
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| T |
6095150 |
gttgcagttgttctgtaacatcatgttcctcacattctagattaagaactagttgttttaagtgat |
6095215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 6089995 - 6090055
Alignment:
| Q |
380 |
taactttaaaacataatcttgtat-----atgtgtaaagaaaactgttttccttttttgat |
435 |
Q |
| |
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|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |
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| T |
6089995 |
taactttaaaacataatcgtttatattgcatgtgtaaagaaaactgttttccttttttgat |
6090055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 6101602 - 6101658
Alignment:
| Q |
119 |
agttgttttgtaatatcattttcctcacattctagatcaaaaaccaattgttttaag |
175 |
Q |
| |
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||||||||| |||||| ||||| |||| |||||||||||||||||| || ||||||| |
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| T |
6101602 |
agttgttttataatataatttttctcatattctagatcaaaaaccacttcttttaag |
6101658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 6213676 - 6213772
Alignment:
| Q |
143 |
tcacattctagatcaaaaaccaattgttttaagtgattaacctcatttccgaaaacacttctattacaaccgctcctgttcacacctgttccattgt |
239 |
Q |
| |
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|||||||||| ||||| ||||||||| ||||| |||||| |||| || | ||||| |||| |||| |||||| ||||||||||| |||||||| |
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| T |
6213676 |
tcacattctaaatcaataaccaattggtttaattgattattctcactttcataaacatttctgttaccaccgctaacgttcacacctgctccattgt |
6213772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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