View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5994_low_5 (Length: 425)

Name: NF5994_low_5
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5994_low_5
NF5994_low_5
[»] chr4 (6 HSPs)
chr4 (19-414)||(23587363-23587758)
chr4 (19-421)||(23596208-23596610)
chr4 (20-252)||(54396567-54396799)
chr4 (28-72)||(35132600-35132644)
chr4 (108-254)||(9335681-9335827)
chr4 (108-237)||(30775484-30775613)
[»] chr7 (15 HSPs)
chr7 (23-285)||(8102814-8103076)
chr7 (23-421)||(8017036-8017434)
chr7 (23-354)||(39985793-39986124)
chr7 (102-237)||(8610143-8610278)
chr7 (108-254)||(13333246-13333392)
chr7 (22-231)||(8538183-8538391)
chr7 (41-254)||(8602139-8602352)
chr7 (113-249)||(8585501-8585637)
chr7 (108-339)||(8667651-8667882)
chr7 (114-237)||(17268177-17268300)
chr7 (108-254)||(10494164-10494310)
chr7 (108-252)||(8659595-8659739)
chr7 (206-339)||(8671335-8671468)
chr7 (119-254)||(3147515-3147650)
chr7 (131-254)||(7877523-7877646)
[»] chr2 (3 HSPs)
chr2 (108-254)||(16657307-16657453)
chr2 (113-252)||(17716485-17716624)
chr2 (164-252)||(12234977-12235065)
[»] chr1 (1 HSPs)
chr1 (108-252)||(4678350-4678494)
[»] chr6 (1 HSPs)
chr6 (113-239)||(11156507-11156633)
[»] chr8 (2 HSPs)
chr8 (119-192)||(42272433-42272506)
chr8 (119-228)||(42324520-42324629)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 23587758 - 23587363
Alignment:
Q  19 accttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaaga 118  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  23587758 accttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtagctttcttatcaaga 23587659  T
Q  119 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23587658 ccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgt 23587559  T
Q  219 tgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccatagaagatatctc 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587558 tgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccatagaagatatctc 23587459  T
Q  319 ttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcat 414  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23587458 ttcagcggaaaattgcttctcttccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcat 23587363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 23596610 - 23596208
Alignment:
Q  19 accttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaaga 118  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596610 accttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaaga 23596511  T
Q  119 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 218  Q
    |||||||||||||| |||||||| || || ||||||||||||| |||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||    
T  23596510 ccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgt 23596411  T
Q  219 tgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccatagaagatatctc 318  Q
    ||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  23596410 tgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctccttcatcttcataagaaccatggaagatatctc 23596311  T
Q  319 ttcagcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcatctca 418  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23596310 ttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcatgtca 23596211  T
Q  419 ctc 421  Q
    |||    
T  23596210 ctc 23596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 54396567 - 54396799
Alignment:
Q  20 ccttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagac 119  Q
    ||||||||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | ||    
T  54396567 ccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaac 54396666  T
Q  120 cataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgtt 219  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| ||||||||||| || ||||| ||    
T  54396667 cataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcatt 54396766  T
Q  220 gaagtaagcaggcacagttacaacggcattctt 252  Q
    ||| |||||||| ||||| ||||| ||||||||    
T  54396767 gaaataagcaggaacagtaacaacagcattctt 54396799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 35132600 - 35132644
Alignment:
Q  28 aatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaa 72  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  35132600 aatagtaagtattgaaacatcaaaagtgccaccaccaagatcgaa 35132644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 9335827 - 9335681
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 207  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||   ||| |||||| | || || |  ||    
T  9335827 tcttatcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcg 9335728  T
Q  208 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 254  Q
    ||| ||||| ||||||||||| ||||| || ||||||||||||||||    
T  9335727 ctgagaatcattgaagtaagctggcacggtaacaacggcattcttga 9335681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 30775484 - 30775613
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 207  Q
    |||| ||||| ||||| |||||||| || ||||| || |||||||| |||||||  ||||| || |||| |||| |||| |||||  | || ||||  ||    
T  30775484 tcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcg 30775583  T
Q  208 ctgtgaatcgttgaagtaagcaggcacagt 237  Q
    ||||| ||| ||||| ||||||||||||||    
T  30775584 ctgtgcatcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 8102814 - 8103076
Alignment:
Q  23 tcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccat 122  Q
    |||||||||||||| ||||| ||||||||||| |||||||| | ||| || || |  |||||||||||||||  |||||| || || || |||||||| |    
T  8102814 tcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgt 8102913  T
Q  123 aagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaa 222  Q
    | ||||||||||||||||| || ||||||||||||||||| ||||| |  ||||  || ||||| |||||||| || ||||||||||| ||||| |||||    
T  8102914 aggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaa 8103013  T
Q  223 gtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctc 285  Q
    ||||||||| ||||| || ||||||||||| || ||   |||||||||||| || ||||||||    
T  8103014 gtaagcagggacagtgacgacggcattcttaatggtgacaccaagataagcttcggcaatctc 8103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 421
Target Start/End: Complemental strand, 8017434 - 8017036
Alignment:
Q  23 tcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccat 122  Q
    |||||||||||||| || || ||||||||||| ||||| || |  || || || |  || |||||||| |||  ||||||||| || || ||||| || |    
T  8017434 tcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaagatcaacacattcttctcgccaacacttgtagcctttttgtcaagtccgt 8017335  T
Q  123 aagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaa 222  Q
    | |||||||| ||||| || || || || ||||||||||| ||||||||||| | ||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  8017334 acgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaa 8017235  T
Q  223 gtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccatagaagatatctcttca 322  Q
    |||||| || || || |||||||||||||| |  |||| ||| || ||||| || ||||||||   ||| || || || |||||||| || || || |||    
T  8017234 gtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctca 8017135  T
Q  323 gcggaaaattgcttctcctccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcatctcactc 421  Q
    || | ||||||||| |||||  | |||||||| ||  | |||||||| || ||| |||| |||| ||| ||||| || |||||||| ||||| ||||||    
T  8017134 gcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggcttttcaccaggaccagcaataaccttaaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 354
Target Start/End: Original strand, 39985793 - 39986124
Alignment:
Q  23 tcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccat 122  Q
    ||||||||||| || |  || ||||||||||| ||||||||||| || || || |  || |||||||| |||  ||| || |||||||| ||||||||||    
T  39985793 tcttcaatagttagcaaagagacatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctctccaacactggttgctttcttgtcaagaccat 39985892  T
Q  123 aagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaa 222  Q
    ||||||| ||||||||||| || ||||| ||||||| ||  ||||| || || | ||| || || ||||| || |||||||||||||| || || || ||    
T  39985893 aagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaa 39985992  T
Q  223 gtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccatagaagatatctcttca 322  Q
    ||||||||| ||||| ||||| |||||||| || |  | |||||| || || || ||||||||   ||| ||||| || ||||| ||||| ||||||||     
T  39985993 gtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatctcacgcatcttcattagcaccatggaagagatctcttcg 39986092  T
Q  323 gcggaaaattgcttctcctccgctttgtagtt 354  Q
    || | ||||| ||| || ||  ||||||||||    
T  39986093 gcagcaaattccttatcttcacctttgtagtt 39986124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 8610143 - 8610278
Alignment:
Q  102 tagctttcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagc 201  Q
    ||||| |||| | ||||||||| |||| ||| ||||| || |||||||| ||||| |  |  ||||| || |||||||||||||| ||||||||||| ||    
T  8610143 tagctctcttctgaagaccatatgcaagagccgcagccgttggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggc 8610242  T
Q  202 ttgacgctgtgaatcgttgaagtaagcaggcacagt 237  Q
    ||  ||||| ||||| || || ||||||||||||||    
T  8610243 tttccgctgagaatcattaaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 13333392 - 13333246
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 207  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || ||||  |  | ||| || |||| |||  |||| |||||| | || || |  ||    
T  13333392 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcg 13333293  T
Q  208 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 254  Q
    ||| ||||| ||||||||||| |||||||| ||||||||||||||||    
T  13333292 ctgagaatcattgaagtaagccggcacagtaacaacggcattcttga 13333246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 8538183 - 8538391
Alignment:
Q  22 ttcttcaatagtaagtagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagacca 121  Q
    ||||||||| ||||| || || |||||||||||||||||||||||||| || || | ||| ||  ||||  ||  ||   ||||| |||| | ||| ||     
T  8538183 ttcttcaat-gtaaggagagatacatcaaaagttccaccaccaagatcaaagatgaaaacttttctctcttcaacacaattagctctcttttgaaggccg 8538281  T
Q  122 taagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttga 221  Q
    || |||| ||||||||| ||||||||||| || || | ||  |||||||| |||| ||||||||| |||||||| || |||   ||||||||||| ||||    
T  8538282 tatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattga 8538381  T
Q  222 agtaagcagg 231  Q
    | ||||||||    
T  8538382 aataagcagg 8538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 8602139 - 8602352
Alignment:
Q  41 gaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcagcagcag 140  Q
    ||||||||||||||||||||||||||||| || || | ||  ||  ||||  ||  ||   ||||| |||| | ||| ||||| |||| |||||| ||||    
T  8602139 gaaacatcaaaagttccaccaccaagatcaaatatgaaaatatttctctcttcaacacaattagctctcttttgaaggccatatgcaagagcagctgcag 8602238  T
Q  141 taggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttac 240  Q
    | || ||||| || || | ||  |||||||| |||| |||| |||| ||||||||||| ||||  ||||| ||||| || || ||||| |||||||| ||    
T  8602239 ttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaac 8602338  T
Q  241 aacggcattcttga 254  Q
    ||| ||||||||||    
T  8602339 aactgcattcttga 8602352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 8585637 - 8585501
Alignment:
Q  113 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 212  Q
    ||||| ||||| |||||||| |||||||| |||||||| || || ||||  ||||| || |||| |||| |||| |||||  | || ||||  ||||| |    
T  8585637 tcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgag 8585538  T
Q  213 aatcgttgaagtaagcaggcacagttacaacggcatt 249  Q
    |||| ||||| |||||||||||||| ||||| |||||    
T  8585537 aatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 339
Target Start/End: Original strand, 8667651 - 8667882
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 207  Q
    |||| ||||| ||||| |||||||| || |||||||||||||| || || |  |  ||||| ||||||| |||   ||| |||||| | || || |  ||    
T  8667651 tcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcg 8667750  T
Q  208 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaaccata 307  Q
    ||| ||||| ||||||||||| |||||||| |||||||||||||||| ||  |  || ||||| ||||| |||| |||   ||| ||  |||| ||||||    
T  8667751 ctgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccata 8667850  T
Q  308 gaagatatctcttcagcggaaaattgcttctc 339  Q
    |||||||| || |||||  |||| ||||||||    
T  8667851 gaagatatttcctcagcacaaaagtgcttctc 8667882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 17268177 - 17268300
Alignment:
Q  114 caagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtga 213  Q
    |||| ||||| |||||||| |||||||| |||||||| || |   |||| ||||| || |||| ||||||||| |||||| | || ||||  ||||| ||    
T  17268177 caaggccatatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgaga 17268276  T
Q  214 atcgttgaagtaagcaggcacagt 237  Q
    ||||||||||||||| || |||||    
T  17268277 atcgttgaagtaagccgggacagt 17268300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 10494310 - 10494164
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 207  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||| || || |  |  ||||| || |||| |||  |||| |||||  | ||||| |  ||    
T  10494310 tcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcg 10494211  T
Q  208 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 254  Q
     || ||||||||||||||||| |||||||| ||||| ||||||||||    
T  10494210 ttgagaatcgttgaagtaagccggcacagtaacaacagcattcttga 10494164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 8659595 - 8659739
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaa-cacattgagtccagaaatgacaccggcatcttttgtagcttgac 206  Q
    |||| |||| |||||| |||||||| |||||||||||||||||||| | ||| ||  ||||| || |||| |||| |||||| |||| | || ||||  |    
T  8659595 tcttgtcaaaaccatatgcaatagctgcagcagtaggttcattaatta-tctgaatgacattaaggccagcaatggcaccggaatctatggtggcttttc 8659693  T
Q  207 gctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 252  Q
    |||| ||||| ||||| || |||||||| || ||||| ||||||||    
T  8659694 gctgagaatcattgaactatgcaggcactgtaacaacagcattctt 8659739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 339
Target Start/End: Complemental strand, 8671468 - 8671335
Alignment:
Q  206 cgctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttgatcgttgtaccaagataagcctctgcaatctccttcattttcataagaacca 305  Q
    ||||| ||||| ||||||||||| ||||| || |||||||||||||||| || ||   | ||||| ||||| |||| |||   ||| ||  |||| ||||    
T  8671468 cgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcacca 8671369  T
Q  306 tagaagatatctcttcagcggaaaattgcttctc 339  Q
    |||||||||| || |||||  |||||||||||||    
T  8671368 tagaagatatttcctcagcacaaaattgcttctc 8671335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 3147515 - 3147650
Alignment:
Q  119 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 218  Q
    ||||| |||||||| ||||||||||||||||| || || | ||  | ||| || |||| ||| ||||| |||||| |||| ||||  ||||| | ||| |    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgctttccgctgagcatcat 3147614  T
Q  219 tgaagtaagcaggcacagttacaacggcattcttga 254  Q
    |||| |||||||| || || ||||| ||||||||||    
T  3147615 tgaaataagcaggtacggtaacaactgcattcttga 3147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 7877646 - 7877523
Alignment:
Q  131 gcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcag 230  Q
    ||||||||||| ||||||||||| || | ||  |||||||| || | ||   |||| ||||||||||| ||||  || || ||||| ||||| ||||| |    
T  7877646 gcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccg 7877547  T
Q  231 gcacagttacaacggcattcttga 254  Q
    ||||||| ||||| ||||||||||    
T  7877546 gcacagtaacaactgcattcttga 7877523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 16657453 - 16657307
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 207  Q
    |||| ||||||||||| |||||||| ||||||||||||||||| |||||||  |  ||||| || ||||  ||| |||| |||||| | || ||||  ||    
T  16657453 tcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcg 16657354  T
Q  208 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattcttga 254  Q
    ||| ||||| ||||||||||| |||||||| ||||| ||||||||||    
T  16657353 ctgcgaatcattgaagtaagctggcacagtaacaacagcattcttga 16657307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 17716624 - 17716485
Alignment:
Q  113 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 212  Q
    |||| |||||||||||| || |||||||| || ||||||||||||||||  | ||| || |||| |||  |||| ||||  || |||||||| | ||| |    
T  17716624 tcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgag 17716525  T
Q  213 aatcgttgaagtaagcaggcacagttacaacggcattctt 252  Q
    ||   || ||||||||||| ||||| ||||||||||||||    
T  17716524 aaaaattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 12234977 - 12235065
Alignment:
Q  164 acattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 252  Q
    |||||||| |||| ||||||||| |||||| | || ||||  || || ||||| ||||| ||||||||||| || ||||| ||||||||    
T  12234977 acattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 4678494 - 4678350
Alignment:
Q  108 tcttatcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 207  Q
    |||| |||| |||||| |||||||| ||| |||||||||| || || |||   |  ||||| ||||||| |||| |||| |||||| | |||||||  ||    
T  4678494 tcttgtcaaaaccatatgcaatagctgcaacagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 4678395  T
Q  208 ctgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 252  Q
     || ||||| |||||||| ||||||||||| |||||| |||||||    
T  4678394 ttgagaatcattgaagtatgcaggcacagtaacaacgacattctt 4678350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 11156507 - 11156633
Alignment:
Q  113 tcaagaccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtg 212  Q
    ||||||||||| ||||| ||||| |||| ||| ||||| || |||| ||  |||||||| |||| ||| ||||| |||||||  || |  || || ||||    
T  11156507 tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtg 11156606  T
Q  213 aatcgttgaagtaagcaggcacagtta 239  Q
    | || || |||||||||||||||||||    
T  11156607 agtcattaaagtaagcaggcacagtta 11156633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 42272506 - 42272433
Alignment:
Q  119 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatc 192  Q
    ||||||||||| |||||||| || ||||||||||| |||||   |||||| |  |||| |||||||||||||||    
T  42272506 ccataagcaatggcagcagcggtgggttcattaatgattctagccacattcaaaccagcaatgacaccggcatc 42272433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 42324629 - 42324520
Alignment:
Q  119 ccataagcaatagcagcagcagtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgctgtgaatcgt 218  Q
    ||||||||||| |||||||| |||||||| ||||| |||||   |||||| |  |||| ||||||||||||||| || || || || | ||| | ||| |    
T  42324629 ccataagcaatggcagcagcggtaggttcgttaatgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcat 42324530  T
Q  219 tgaagtaagc 228  Q
    ||||||||||    
T  42324529 tgaagtaagc 42324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University