View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5994_low_6 (Length: 409)
Name: NF5994_low_6
Description: NF5994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5994_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 115 - 394
Target Start/End: Original strand, 37477816 - 37478095
Alignment:
| Q |
115 |
gatgatacctggccacaaacattgctacacaaatcatcagnnnnnnnagaacaataattccctccagtttcacccatcatccaccacattttcgcgttta |
214 |
Q |
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| T |
37477816 |
gatgatacctggccacaaacattgctacacaaatcatcagtttttttagaacaataattccctccagtttcacccatcatccaccacattttcgcgttta |
37477915 |
T |
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| Q |
215 |
ggtttcaatgaaatcaaaaaaccagatcgatcgattgattgaaccaccgatcctcaaaaagaaatgtcgtagatcgtggtttagaagaacaagttttgaa |
314 |
Q |
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| T |
37477916 |
ggtttcaatgaaatcaaaaaaccagatcgatcgattgattgaaccaccgatcctcaaaaagaaatgtcgtagatcgtggtttagaagaacaagttttgaa |
37478015 |
T |
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| Q |
315 |
tcgaagaaatcttagtaaagaaggaaagaaacgacgcaaacgtgcgttgtttccaaacgcaaaaacggggttttgagatt |
394 |
Q |
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| T |
37478016 |
tcgaagaaatcttagtaaagaagcaaagaaacgacgcaaacgtgcgttgtttccaaacgcaaaaacggggttttgagatt |
37478095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 37477707 - 37477755
Alignment:
| Q |
9 |
catcatcacagacactaaattaaacttaaaatttcattgatattatact |
57 |
Q |
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| T |
37477707 |
catcaccaaagacactaaattaaacttaaaaattcattgatattatact |
37477755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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