View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5995_high_1 (Length: 624)
Name: NF5995_high_1
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5995_high_1 |
 | |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Complemental strand, 8403752 - 8403154
Alignment:
| Q |
18 |
tgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatg |
117 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8403752 |
tgaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatgcagatg |
8403653 |
T |
|
| Q |
118 |
agagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8403652 |
agagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttgatt |
8403553 |
T |
|
| Q |
218 |
tcttgtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403552 |
tcttgtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgtt |
8403453 |
T |
|
| Q |
318 |
agagaattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggcca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
8403452 |
agagaattgtataatgtactcccatttttctcataataaatacaatgggtacgacaatgcttgatgaatatatataacaatgcttgatcaattttggcca |
8403353 |
T |
|
| Q |
418 |
cctagatggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
8403352 |
cctagatggccagattgaaccaagtgttgggcgttgacgcaacccggatagggaaatattctccatgatatgaac-aaaatgatgtatcccctaattaac |
8403254 |
T |
|
| Q |
518 |
--aaaaaatgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgatgatgt |
615 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8403253 |
aaaaaaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgt |
8403154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 608
Target Start/End: Complemental strand, 8429607 - 8429041
Alignment:
| Q |
18 |
tgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatg |
117 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| || || |||||||| ||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
8429607 |
tgaagaaactattgaagataaagatttgaataaaagagaaaacggggaagtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatg |
8429508 |
T |
|
| Q |
118 |
agagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatt |
217 |
Q |
| |
|
||||| ||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
8429507 |
agagaatttgcctcgaaatctgctctctatcggatggaaggacgtgagatagatgaattcgccaacaaactcttctgaaaacaacatttt--------tt |
8429416 |
T |
|
| Q |
218 |
tcttgtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgtt |
317 |
Q |
| |
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| |||||||||||||||||| |||| |||||||| |||||||||| ||||||| ||||||||||||||| | |||| || |
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|
| T |
8429415 |
ttttgtttgattcattcttttcatacgaattctttcaattattttga----aaataaaaccgttgaacgtttgaggagtaact---------------tt |
8429335 |
T |
|
| Q |
318 |
agagaattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggcca |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||| |||||| | |||||||| ||| ||| | || |||||||||| ||||||||| |
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|
| T |
8429334 |
agagaattgtataatgtactcccatttttcttatagtaaatacaacgggtacgataatgcttgtggaaaataca--acgatgcttgatctgttttggcca |
8429237 |
T |
|
| Q |
418 |
cctaga-----tggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaa |
512 |
Q |
| |
|
|||||| ||| || ||||||||||||||| ||| ||||||||||| ||| ||||||| | |||||| ||| ||| ||||| || ||||| |||| |
|
|
| T |
8429236 |
cctagattaggtggtcacattgaaccaagtgttaggcattgacacaacctggatagggaaacactctccaggat---aac-aaaatcatttatcccctaa |
8429141 |
T |
|
| Q |
513 |
ttaacaaaaaatgtcatattca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatg |
608 |
Q |
| |
|
|| || ||||||| |||||||| |||||||||||| |||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8429140 |
ttgacgaaaaatgccatattcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaatg |
8429041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 8376193 - 8376297
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
132 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||||||| |
|
|
| T |
8376193 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctca |
8376292 |
T |
|
| Q |
133 |
aaatc |
137 |
Q |
| |
|
||||| |
|
|
| T |
8376293 |
aaatc |
8376297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 8395879 - 8395983
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
132 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
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|
| T |
8395879 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca |
8395978 |
T |
|
| Q |
133 |
aaatc |
137 |
Q |
| |
|
||||| |
|
|
| T |
8395979 |
aaatc |
8395983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 8405693 - 8405589
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
132 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
|
|
| T |
8405693 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatca |
8405594 |
T |
|
| Q |
133 |
aaatc |
137 |
Q |
| |
|
||||| |
|
|
| T |
8405593 |
aaatc |
8405589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 8430964 - 8430889
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta |
108 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||||||| || ||||||||||||| ||||||| |
|
|
| T |
8430964 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta |
8430889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 8411813 - 8411709
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
132 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||| || || |||| ||||||||||||||| | ||| |||| || ||||||||| |
|
|
| T |
8411813 |
agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca |
8411714 |
T |
|
| Q |
133 |
aaatc |
137 |
Q |
| |
|
||||| |
|
|
| T |
8411713 |
aaatc |
8411709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 8433911 - 8433807
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
132 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||| || || |||| ||||||||||||||| | ||| |||| || ||||||||| |
|
|
| T |
8433911 |
agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca |
8433812 |
T |
|
| Q |
133 |
aaatc |
137 |
Q |
| |
|
||||| |
|
|
| T |
8433811 |
aaatc |
8433807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 8416897 - 8416822
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta |
108 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||| |||| |
|
|
| T |
8416897 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgta |
8416822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 25 - 129
Alignment:
| Q |
33 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
132 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
|
|
| T |
25 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca |
124 |
T |
|
| Q |
133 |
aaatc |
137 |
Q |
| |
|
||||| |
|
|
| T |
125 |
aaatc |
129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 55336056 - 55335978
Alignment:
| Q |
29 |
ttgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgt |
107 |
Q |
| |
|
|||| |||||||||||| | |||||||||||||||||| | ||||| ||||| || |||||| || ||||||||||| |
|
|
| T |
55336056 |
ttgaggagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgt |
55335978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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