View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5995_high_3 (Length: 490)
Name: NF5995_high_3
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5995_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 50372693 - 50372406
Alignment:
| Q |
14 |
atcatcacactggtaattagcaaggtaaaagtgaaggaagatgtttgtctttgatgaagataagtttaagttttaaaactattagggtgttgtttcnnnn |
113 |
Q |
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| T |
50372693 |
atcatcacactggtaattaacaaggtaaaagtgaaggaagatgtttgtctttgatgaagataagtttaagttttaaaactattaaggtgttgtttcaaaa |
50372594 |
T |
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| Q |
114 |
nnnn----ctattaaggtatcaatatcattttaataaaccttataagatgtgattgtagttttcccttgtctttatgatcaattgatgattactttatat |
209 |
Q |
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| T |
50372593 |
aaaaaaaactattaaggtgtcaatatcattttaataaaccttgtaagatgtgattgtagttttcccttgtctttatgatcaattgatgattactttatat |
50372494 |
T |
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| Q |
210 |
gaaaataaaacgannnnnnnctttnnnnnnncaactagataaaattaca----tgtttgtttgagggagacaaacttaattcaataaa |
293 |
Q |
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| T |
50372493 |
gaaaataaaacgatttttttctttaaaaaaacaactagataagattacacttttgtttgtttgagggagacaaacttaattcaataaa |
50372406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 295 - 480
Target Start/End: Complemental strand, 50372369 - 50372184
Alignment:
| Q |
295 |
ataatggagctattagaggaagatgctacattcgctaatgtgtgaacgattccattaatctgtctccgtctaatttgattatgaagttttgaaatgtaat |
394 |
Q |
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| T |
50372369 |
ataatggagctattataggatgatgctacattcgttaatgtgtgaacgatcccattaatttgtctccgtctaatttgattatgaagttttgaaatgtaat |
50372270 |
T |
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| Q |
395 |
ttggaacaactacttacaaacatacattaatttaattatatcacattcttactagcggaacgcccatcaaccataatgtccctttg |
480 |
Q |
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| T |
50372269 |
ttggaacaactatttacagacatacattaatttaattatatcacattcttactagcggaacgcccatcaaccacaatgtccctttg |
50372184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 33880398 - 33880354
Alignment:
| Q |
432 |
atatcacattcttactagcggaacgcccatcaaccataatgtccc |
476 |
Q |
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| T |
33880398 |
atatcacattcttaccagcggaacgcccatcaaccctaatgtccc |
33880354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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