View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5995_high_6 (Length: 364)
Name: NF5995_high_6
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5995_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 42203022 - 42203353
Alignment:
| Q |
19 |
gttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaacggagaactagaa |
118 |
Q |
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| T |
42203022 |
gttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaacggagaactagaa |
42203121 |
T |
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| Q |
119 |
gagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacctatgactctatgag |
218 |
Q |
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| T |
42203122 |
ga--------cagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacctatgactctatgag |
42203213 |
T |
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| Q |
219 |
agcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
42203214 |
agcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcctataattgtctccaccggtcaggtattat |
42203313 |
T |
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| Q |
319 |
ccacaatcctttttgtgcgaaacattgttctgatgatgtc |
358 |
Q |
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| T |
42203314 |
ccacaatcctttttgtgcgaaacattgttctgatggtgtc |
42203353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 42211890 - 42212221
Alignment:
| Q |
19 |
gttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaacggagaactagaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42211890 |
gttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaattggtcataataggcaacggagaactagaa |
42211989 |
T |
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| Q |
119 |
gagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacctatgactctatgag |
218 |
Q |
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| T |
42211990 |
ga--------cagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatcctgaggttgatacctatgactctatgag |
42212081 |
T |
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| Q |
219 |
agcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
42212082 |
agcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcctataattgtctccaccggtcaggtattat |
42212181 |
T |
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| Q |
319 |
ccacaatcctttttgtgcgaaacattgttctgatgatgtc |
358 |
Q |
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| T |
42212182 |
ccacaatcctttttgtgcgaaacattgttctgatggtgtc |
42212221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 358
Target Start/End: Complemental strand, 42421306 - 42421026
Alignment:
| Q |
77 |
gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt |
176 |
Q |
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|||||||| ||||||||||||| | ||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42421306 |
gaattacatgaattggtcataacaagcaacggagaactaggaga--------cagttttgaaaccgtctcatctcttcttaggaaactgaaagactgcgt |
42421215 |
T |
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| Q |
177 |
gctcacagaaaatcctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtc----------------gattttcgatgt |
260 |
Q |
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|||| ||||||||||||||||||||||||||||| || |||||| ||| |||||||||||| ||| |||||||| ||| |
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| T |
42421214 |
gctcgcagaaaatcctgaggttgatacctatgac--------agtgagaat-gttccaattaagcaccggtctcctgtaatcccagatgattttcggtgt |
42421124 |
T |
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| Q |
261 |
cctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaacattgttctgatgatgtc |
358 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
42421123 |
cctatatctcttgaactaatgaaagaccctgtaatcgtctcaaccggtcaggtattatcgacaatcctttttgtgcgaaacaatgttctgatgatgtc |
42421026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 358
Target Start/End: Original strand, 42217915 - 42218202
Alignment:
| Q |
77 |
gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt |
176 |
Q |
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|||||||||||||||||||||| | | ||||||||||||| ||| || || |||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
42217915 |
gaattacacgaattggtcataaaaagtaacggagaactaggagac-agttttgaaagttgaaaccatctcatcccttcttaggaaactgaaaaactgcat |
42218013 |
T |
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| Q |
177 |
gctcacagaaaatcctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtc----------------gattttcgatgt |
260 |
Q |
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|||| ||||||||||| ||||||||||||||| || ||| |||| ||||||||||||||| ||| |||||||||||| |
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| T |
42218014 |
gctcgcagaaaatcctaaggttgatacctatg--------agggcgcgaat-gtttcaattaagcactggtctcgtgtaatcccagaggattttcgatgt |
42218104 |
T |
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| Q |
261 |
cctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaacattgttctgatgatgtc |
358 |
Q |
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||||||||||||||| ||| | |||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
42218105 |
cctatatctcttgaattaagggaagatcctgtaattgtctcaaccggtcaggtattatccacaatcctttttgtgtgaaacattgttctgatggtgtc |
42218202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 42421373 - 42421338
Alignment:
| Q |
21 |
tatactcaaaaggctctctgagaagttgcatctgag |
56 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
42421373 |
tatactcaaaagactctctgagaagttgcatctgag |
42421338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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