View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5995_high_9 (Length: 308)
Name: NF5995_high_9
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5995_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 46709154 - 46708873
Alignment:
| Q |
20 |
aataagtcgccgattcatgcctgagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacgggacaattg |
119 |
Q |
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| T |
46709154 |
aataagtcgccgattcatgcctgagaaaggaactatagagtatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacggcacaattg |
46709055 |
T |
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| Q |
120 |
cagactcttgttggaatttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcattggacatgtgatg |
219 |
Q |
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| T |
46709054 |
cagactcttgttggcatttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcattggacatgtgatg |
46708955 |
T |
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| Q |
220 |
cagaaccactggaagcatttgacaggtttggaaagaaactgaaagaaattgaagaaagaattgtagctatgaatgatgatgt |
301 |
Q |
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| T |
46708954 |
cagagccactggaagcatttgacaggtttggaaagaaactgaaagaaattgaagaaagaattgtagctatgaatgatgatgt |
46708873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 46708187 - 46707941
Alignment:
| Q |
23 |
aagtcgccgattcatgcctgagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttt-tgaaaacaatcacgggacaattgca |
121 |
Q |
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| T |
46708187 |
aagtcgcagtttcatgcctgagaaaggaactatagagtattatgaacttgtggcaaatcctgagaaggctttttctgaaaacagttgcggcgcaattgca |
46708088 |
T |
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| Q |
122 |
gactcttgttggaatttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcattggacatgtgatgca |
221 |
Q |
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| T |
46708087 |
gattcttgttggcgtttcgcttatagaaatactgtctgcacattcttctgatgaggtctaccttggagaaagagacactaaacattggatatatgatgca |
46707988 |
T |
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| Q |
222 |
gaaccactggaagcatttgacaggtttggaaagaaactgaaagaaat |
268 |
Q |
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| T |
46707987 |
gagccattggaagcatttgacaaatttggaaagaaactgaaagaaat |
46707941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 36926451 - 36926615
Alignment:
| Q |
34 |
tcatgcctgagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacgggacaattgcagactcttgttgg |
133 |
Q |
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| T |
36926451 |
tcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttgg |
36926550 |
T |
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| Q |
134 |
aatttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagaca |
198 |
Q |
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| T |
36926551 |
tctttcacttgtggaaatattgtctaggcatgctagtgatgaggtctaccttggacagagagaca |
36926615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 6261995 - 6261939
Alignment:
| Q |
144 |
atagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagt |
200 |
Q |
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| T |
6261995 |
atagaaatattgtcgaggcatgcttctgatgagtactaccttggacaaagagacagt |
6261939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 42689835 - 42689887
Alignment:
| Q |
144 |
atagaaattttgtctacacattcttctgatgaggtctaccttggacaaagaga |
196 |
Q |
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|||||||| ||||| | |||| |||||||||| || ||||||||||||||||| |
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| T |
42689835 |
atagaaatattgtcaagacatgcttctgatgaagtttaccttggacaaagaga |
42689887 |
T |
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