View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5995_low_10 (Length: 302)
Name: NF5995_low_10
Description: NF5995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5995_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 46768419 - 46768123
Alignment:
| Q |
10 |
catcatcactactcacccccaaagnnnnnnnnncctcaagactaaactcccaattctgaacaccaaagctaagccacctctaactcccatcatcacatca |
109 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46768419 |
catcgtcactactcacccccaaagaaaaaaaaccctcaagactaaactcccaatcctgaacaccaaagctaagccacctctaactcctatcatcacatca |
46768320 |
T |
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| Q |
110 |
cattt----------------------atgaaaatgcttttaaaacaataccctgaagtaattattgtggattgcagagcacttagtttaccctcctcag |
187 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46768319 |
catttgtgtacaattatctctctttttatgaaaatgcttttaaaacaataccctgaagtaattattgtggattgcagagcacttagtttaccctcctcag |
46768220 |
T |
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| Q |
188 |
tcctcaccagtaacttctgttggctgtatgcattgtgacatatttagtaaccagttagtattacacaactaattttttgatattgcatgttatgtat |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46768219 |
tcctcaccagtaacttctgttggctgtatgcattgtgacatatttagtaaccagttagtattacacaactaattttttgatattgcatgttatgtat |
46768123 |
T |
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